hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg19517/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0345  ( 962 res)   mbg19517

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CA       Cadherin repeats.                              439.6   1.6e-127   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CA         1/6      62   148 ..     1   121 []    16.3    0.059
CA         2/6     172   257 ..     1   121 []    87.2    2e-21
CA         3/6     281   365 ..     1   121 []    95.2  7.9e-24
CA         4/6     389   470 ..     1   121 []   101.8    8e-26
CA         5/6     494   580 ..     1   121 []    96.6    3e-24
CA         6/6     608   690 ..     1   121 []    58.9  6.4e-13

Alignments of top-scoring domains:
CA: domain 1 of 6, from 62 to 148: score 16.3, E = 0.059
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      v  +  D g   e ++      ++ ++ +  ++++++l +++ ++G 
   mKIAA0345    62    VGRIAQDLG--LELAE------LVPRLFRvaskdrgdLLEVNLQNG- 99   

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                             i++++ ++DREe +++      +e ++  e+         
   mKIAA0345   100 ----------ILFVNSRIDREELCGRS-----AECSIHLEVIVDR----- 129  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                      v v+V D+NDN+P   
   mKIAA0345   130 -------------PLQVFHVEVEVRDINDNPP    148  

CA: domain 2 of 6, from 172 to 257: score 87.2, E = 2e-21
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                        A+DaD g   +N+       ++Ys++s+++Fs+d +         
   mKIAA0345   172    EGASDADIG---TNSL------LSYSLNSseYFSLDVKRKD----EE 205  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                   ++ + ++++k L+RE++         +e++L ++A+DgG p         
   mKIAA0345   206 IKSLGLVLKKLLNREDI---------PEHNLLITAVDGGKPE-------- 238  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          l++t++v +tVlDvNDNaP   
   mKIAA0345   239 -------LTGTTQVKITVLDVNDNAP    257  

CA: domain 3 of 6, from 281 to 365: score 95.2, E = 7.9e-24
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      v A+D+D+g    N +      ++Ys+ ++ + +  ++F++dp +G 
   mKIAA0345   281    VDASDLDEG---VNKD------IVYSFHQdmsleilsKFHLDPISG- 317  

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                              it+++ +D+Ee+         +++++++eA D+G+pp  
   mKIAA0345   318 ----------YITVKGNIDFEET---------KSFEIQIEAADKGTPP-- 346  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                +++++tv v+++DvNDN P   
   mKIAA0345   347 -------------MTDHCTVLVEIVDVNDNVP    365  

CA: domain 4 of 6, from 389 to 470: score 101.8, E = 8e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      +s++D+Dsg    Ng+      vt+s++++ +F++ ++  +      
   mKIAA0345   389    ISVSDRDSG---ANGQ------VTCSLTPqvPFKLVSTFKN------ 420  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     ++ +++   LDRE++         s+Y+++v+A+DgG+pp        
   mKIAA0345   421 --YYSLVLDSVLDRETI---------SNYNVVVTARDGGSPP-------- 451  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          l +ta+v v+V DvNDNaP   
   mKIAA0345   452 -------LCTTASVSVEVADVNDNAP    470  

CA: domain 5 of 6, from 494 to 580: score 96.6, E = 3e-24
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      vsA DaD+    eN+       v+Ys+++++ +++  +++ s+++e+
   mKIAA0345   494    VSAMDADAQ---ENAL------VSYSLVErrvgerllssYVSVHAES 531  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G            +++++pLD+Ee          +  +++v A+D+G p 
   mKIAA0345   532 G-----------KVFALQPLDHEEL---------ELLQFQVSARDAGVPA 561  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  l s++t++v+VlD+NDNaP   
   mKIAA0345   562 ---------------LGSNVTLQVFVLDENDNAP    580  

CA: domain 6 of 6, from 608 to 690: score 58.9, E = 6.4e-13
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      v+A+DaDsg    N++      ++Y++ s  ++++ +F++   tG  
   mKIAA0345   608    VRAVDADSG---YNAW------LSYELQSaagsgrlPFRVGLYTG-- 643  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                            +i+tt+ LD  +          ++ +L v ++D+G+p    
   mKIAA0345   644 ---------EISTTRVLDETDA---------PRQRLLVLVKDHGEPV--- 672  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                               l++tat+ v ++    + P   
   mKIAA0345   673 ------------LTATATLLVSLVE-SGHTP    690  

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