hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpg/mpg00583/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0344 ( 800 res) mpg00583 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- S_TKc Serine/Threonine protein kinases, catalytic 232.7 3.1e-65 1 TyrKc Tyrosine kinase, catalytic domain 80.7 1.7e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- S_TKc 1/1 233 491 .. 1 231 [] 232.7 3.1e-65 TyrKc 1/1 233 491 .. 1 280 [] 80.7 1.7e-19 Alignments of top-scoring domains: S_TKc: domain 1 of 1, from 233 to 491: score 232.7, E = 3.1e-65 *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr ++ ++G+G+F +Vy++ d++t +vA ++ +++ ++++++r++ mKIAA0344 233 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQdrkltkserQRFKE 279 EikiLkk.dHPNIVkLydvfed.....dklylVmEyceGdlGdLfdllkk E ++Lk +HPNIV++yd++e++ ++++++ lV+E++ G+L+++lk+ mKIAA0344 280 EAEMLKGlQHPNIVRFYDSWEStvkgkKCIVLVTELMTS--GTLKTYLKR 327 rgrrglrkvlsE.earfyfrQilsaLeYLHsq..gIiHRDLKPeNiLLds + + ++ r+++rQil++L++LH +++ IiHRDLK +Ni+++ mKIAA0344 328 FKV------MKIkVLRSWCRQILKGLQFLHTRtpPIIHRDLKCDNIFITG 371 ...hvKlaDFGlArql.....ttfvGTpeYmAPEvl..gYgkpavDiWSl +++ vK++D GlA++ + + ++++GTpe+mAPE+ +++Y+ +vD++++ mKIAA0344 372 ptgSVKIGDLGLATLKrasfaKSVIGTPEFMAPEMYeeKYDE-SVDVYAF 420 GcilyElltGkpPFp...qldlifkkig............SpeakdLikk G ++ E++t + P+++ ++ ++i++++ ++ ++ + ++ pe+k++i++ mKIAA0344 421 GMCMLEMATSEYPYSecqNAAQIYRRVTsgvkpasfdkvaIPEVKEIIEG 470 lLvkdPekRlta.eaLedeldikaHPff<-* + + + ++R++++++L+ H ff mKIAA0344 471 CIRQNKDERYSIkDLLN-------HAFF 491 TyrKc: domain 1 of 1, from 233 to 491: score 80.7, E = 1.7e-19 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr l+++ ++G+G F +VykG +++++eVA L++ + ++++++ F + mKIAA0344 233 LKFDIEIGRGSFKTVYKGLDTettVEVAWCELQDRKltkseRQRFKE 279 EakiMkklGgkHpNiVkLl....GvcteegrrFmevePlmivmEymegGd Ea+++k l +HpNiV+++++ + + + + + +v+E+m G mKIAA0344 280 EAEMLKGL--QHPNIVRFYdsweSTVKGK-------KCIVLVTELMTSGT 320 LldyLrknrpklslsdLlsfAlQIAkGMeYLesk..nfvHRDLAARNcLv L+ yL++ + + + L s++ QI kG ++L+ ++++++HRDL + N+ + mKIAA0344 321 LKTYLKRFKV-MKIKVLRSWCRQILKGLQFLHTRtpPIIHRDLKCDNIFI 369 genk.vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAP + + + vKI+D GL+ +k+++ + + mAP mKIAA0344 370 TGPTgSVKIGDLGLATLKRAS----FAKSVIGT-----PEF------MAP 404 EslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylk E ++ + + DV++FG ++ E+ t + + +++++++++ mKIAA0344 405 EMYEEK-YDESVDVYAFGMCMLEMATSEYPYSEC-----QNAAQIYRRVT 448 kGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl +G + + + + +e+ ++++ C + + ++R + ++l ++ ++ mKIAA0344 449 SGVKPASFDKV-------AIPEVKEIIEGCIRQNKDERYSIKDLlnHAFF 491 <-* mKIAA0344 - - //