hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg04270/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0343 ( 1202 res) mbg04270 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IGc2 Immunoglobulin C-2 Type 250.1 1.8e-70 6 IG Immunoglobulin 242.1 4.6e-68 6 FN3 Fibronectin type 3 domain 156.3 3.1e-42 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IGc2 1/6 69 140 .. 1 56 [] 28.1 0.0012 IG 1/6 63 152 .. 1 58 [] 24.3 0.017 IGc2 2/6 168 235 .. 1 56 [] 4.9 1.7 IG 2/6 162 249 .. 1 58 [] 36.2 4.5e-06 IGc2 3/6 293 357 .. 1 56 [] 69.6 3.9e-16 IG 3/6 287 368 .. 1 58 [] 44.8 1.2e-08 IGc2 4/6 383 449 .. 1 56 [] 51.6 1.1e-10 IG 4/6 377 460 .. 1 58 [] 47.8 1.4e-09 IGc2 5/6 477 542 .. 1 56 [] 54.8 1.1e-11 IG 5/6 471 553 .. 1 58 [] 36.6 3.3e-06 IGc2 6/6 568 633 .. 1 56 [] 41.2 1.4e-07 IG 6/6 562 644 .. 1 58 [] 52.3 6.3e-11 FN3 1/4 647 730 .. 1 69 [] 48.8 7.2e-10 FN3 2/4 744 830 .. 1 69 [] 23.0 0.041 FN3 3/4 846 937 .. 1 69 [] 46.1 4.6e-09 FN3 4/4 952 1037 .. 1 69 [] 48.5 9e-10 Alignments of top-scoring domains: IGc2: domain 1 of 6, from 69 to 140: score 28.1, E = 0.0012 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + ++++++C+a g+p p+++W+++g++ + ++++ + +++++tL mKIAA0343 69 DPRENIVIQCEAKGKPPPSFSWTRnGTHFDidkdplvtmkpGSGTLV 115 iknvsleDs....GlYtCvArNsvg<-* i +s++ +++ +G+Y+C+ArN+ g mKIAA0343 116 INIMSEGKAetyeGVYQCTARNERG 140 IG: domain 1 of 6, from 63 to 152: score 24.3, E = 0.017 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++ + e+++++C+a+++++++++W++++++ + ++++ + ++ mKIAA0343 63 PKdYIIDPRENIVIQCeAKgkpppSFSWTrngthfdidkdplvtmkp 109 ....LtI.nvtpeDse..sgGtYtCaat..sgsasseqgttLtVl<-* ++++L+I+ ++ +e+ + G+Y+C+a++ g a s +++ ++ + mKIAA0343 110 gsgtLVInIMSEGKAEtyE-GVYQCTARneRGAAVS-NNIVVRPS 152 IGc2: domain 2 of 6, from 168 to 235: score 4.9, E = 1.7 *->leGqsVtLtCp.asgdpvpnItWlk..gkplp........sgstLti + Gqs++L+C++ g p + I W ++ ++lp++++ +++ ++ L + mKIAA0343 168 QNGQSLVLPCRpPIGLPPAIIFWMDnsFQRLPqservsqgLNGDLYF 214 knvsleDsGl.YtCvArNsvg<-* +nv +eD ++Y C+Ar ++ mKIAA0343 215 SNVLPEDTREdYICYARFNHT 235 IG: domain 2 of 6, from 162 to 249: score 36.2, E = 4.5e-06 *->pp.vtvkeGesvtLtC.as......titWy................. ++++ + G+s++L+C+ + + ++ i+W++++ ++ +++ + +++ mKIAA0343 162 LEpIVLQNGQSLVLPCrPPiglppaIIFWMdnsfqrlpqservsqgl 208 ...LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-* +++L ++nv peD+ + +Y C a+ +++ +++ q++ L+V mKIAA0343 209 ngdLYFsNVLPEDT--REDYICYARfnhtQTIQQK-QPISLKVI 249 IGc2: domain 3 of 6, from 293 to 357: score 69.6, E = 3.9e-16 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn l G+ ++L+C+a+g p+p I W+k++ +lp +++ ++ ++tL+i++ mKIAA0343 293 LRGNVLSLECIAEGLPTPIIYWIKeDGMLPanrtfyrnFKKTLQITH 339 vsleDsGlYtCvArNsvg<-* vs++DsG+Y+C+A N+ g mKIAA0343 340 VSEADSGNYQCIAKNALG 357 IG: domain 3 of 6, from 287 to 368: score 44.8, E = 1.2e-08 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ + +G ++L+C a++ +++ i+W + ++ + +++ ++ ++ mKIAA0343 287 EShKEELRGNVLSLECiAEglptpIIYWIkedgmlpanrtfyrnfkk 333 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +L+I++v+++Ds G+Y+C a++ g ++ ++ +tV+ mKIAA0343 334 tLQItHVSEADS---GNYQCIAKnaLGAVHH--TISVTVK 368 IGc2: domain 4 of 6, from 383 to 449: score 51.6, E = 1.1e-10 *->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti +G++ tL C+a+g+p p I+Wl +g p++ ++++++ +g t + mKIAA0343 383 SPGENGTLICRANGNPKPRISWLTnGVPIEialddpsrkiDGDTIIF 429 knvsleDsGlYtCvArNsvg<-* +nv+++ s +Y+C A+N+ g mKIAA0343 430 SNVQESSSAVYQCNASNKYG 449 IG: domain 4 of 6, from 377 to 460: score 47.8, E = 1.4e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++++ ++Ge+ tL C+a+++++++i+W++++ + ++++++ + mKIAA0343 377 PQnLVLSPGENGTLICrANgnpkpRISWLtngvpieialddpsrkid 423 ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++++++nv+++ s ++Y+C a++++g + ++ + Vl mKIAA0343 424 gdtIIFsNVQESSS---AVYQCNASnkYGYLLA--NAFVNVL 460 IGc2: domain 5 of 6, from 477 to 542: score 54.8, E = 1.1e-11 *->leGqsVtLtCpasgdpvpnItWlk...gkplp.......sgstLtik + +++ L C g+p p+I W+k+++g+ l ++ ++++tL+i mKIAA0343 477 IANRPALLDCAFFGSPMPTIEWFKgtkGSALHediyvlhDNGTLEIP 523 nvsleDsGlYtCvArNsvg<-* ++++ G+YtCvArN+ g mKIAA0343 524 VAQKDSTGTYTCVARNKLG 542 IG: domain 5 of 6, from 471 to 553: score 36.6, E = 3.3e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. + v + ++ L C + +++ +ti W+++++++ + + +++ mKIAA0343 471 NTlYQVIANRPALLDCaFFgspmpTIEWFkgtkgsalhediyvlhdn 517 ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++L+I+ ++++ + GtYtC+a+++ g+a+ +++L+++ mKIAA0343 518 gtLEIpVAQKDST---GTYTCVARnkLGMAKN--EVHLEIK 553 [output cut off at A = 10 top alignments] //