hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp04120/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0341  ( 539 res)   mbp04120

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Fez1     Fez1                                           325.5    6.2e-94   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Fez1       1/1     361   522 ..     1   220 []   325.5  6.2e-94

Alignments of top-scoring domains:
Fez1: domain 1 of 1, from 361 to 522: score 325.5, E = 6.2e-94
                   *->TkWEVCQKsGEISLLKQQLKESQAEVnQKaSEilaLraqLrdtRAqL
                      ++WEVCQK++EISLLKQQL+E+QAE++QK++Ei++L++qLr++RAq+
   mKIAA0341   361    ARWEVCQKTAEISLLKQQLREAQAELAQKLAEIFSLKTQLRGSRAQA 407  

                   rekEerllgLrdAlrtKeLELEvCEgELqRklqEaaltPvDLvElrEkvg
                   ++++++l++Lr+A+++               lqE+a+       ++E++g
   mKIAA0341   408 QAQDAELARLREAVHS---------------LQEQAP-------REEAPG 435  

                   slEadeaklReqadaaaaadvRmRqDAqGrPelllesdeAkvdqeGeGgt
                   s+E+d++k+R++                     l+   eA       Gg+
   mKIAA0341   436 SCETDDCKSRGL---------------------LG---EA-------GGS 454  

                   eAqlreLRrelERLRAELreERqrrerQalsFeqERlvWqeEKEkVirYQ
                   eA     R+++E+LRAEL++ER+r+++Qal+FeqER++WqeEKE+V+rYQ
   mKIAA0341   455 EA-----REGAEQLRAELLQERLRGQEQALRFEQERQTWQEEKERVLRYQ 499  

                   kQLQlSYveMYqRNQaLEkeLqq<-*
                   +++Q+SY++MY+RNQaLE+eL++   
   mKIAA0341   500 REIQGSYMDMYRRNQALEHELRL    522  

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