hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15521/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0340  ( 983 res)   mbg15521

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)      85.2    7.9e-21   1
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      66.4    3.5e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1     426   505 ..     1    80 []    66.4  3.5e-15
C2         1/1     570   677 ..     1    92 []    85.2  7.9e-21

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 426 to 505: score 66.4, E = 3.5e-15
                   *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv
                      + lG+ +vg++ ++ ++ g+f+++v++Gs A+  G     +L++GD+
   mKIAA0340   426    ALLGLKVVGgkmtdlgrlGAFITKVKKGSLADVVG-----HLRAGDE 467  

                   IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +le+NG +++ g+t ee+ +++ +++    + +v+++v R+    
   mKIAA0340   468 VLEWNG-KPLPGATNEEVYNIILESKS---EPQVEIIVSRPI    505  

C2: domain 1 of 1, from 570 to 677: score 85.2, E = 7.9e-21
                   *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt
                      +L v++++A +Lp++ ++++++PYVk++  ++++++++++Tk+vkk 
   mKIAA0340   570    QLIVNVLQATDLPprvdgrprNPYVKMYflpdrsdkskrRTKTVKKL 616  

                   lsgfNPvWnEesetFeFevpp......s.LeieVyDk........dfiGr
                   l    P+Wn+   tF+++ +++++ +++ Lei+V+D ++  +++++f+G+
   mKIAA0340   617 L---EPKWNQ---TFVYSHVHrrdfreRmLEITVWDQprvqdeesEFLGE 660  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                   + i               l++ l  ++++++   
   mKIAA0340   661 ILIE--------------LETALlDDEPhWY    677  

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