hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15521/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0340  ( 983 res)   mbg15521

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       C2 domain                                       99.1    8.4e-26   1
PDZ      PDZ domain (Also known as DHR or GLGF)          50.2    4.7e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1     417   500 ..     1    82 []    50.2  4.7e-11
C2         1/1     571   662 ..     1    88 []    99.1  8.4e-26

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 417 to 500: score 50.2, E = 4.7e-11
                   *->evtlekevkrgglGfsikggsdk.....givvsevlpGsgaAeagGr
                       +t++ke ++  lG++++gg+  + ++ g+++++v +G + A++ G 
   mKIAA0340   417    RTTMPKE-SGALLGLKVVGGKMTdlgrlGAFITKVKKG-SLADVVGH 461  

                   LkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   L++GD +l+ NG+++ + + e++  ++ +s++ e +++i+   
   mKIAA0340   462 LRAGDEVLEWNGKPLPGATNEEVYNIILESKS-EPQVEII    500  

C2: domain 1 of 1, from 571 to 662: score 99.1, E = 8.4e-26
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkd.qkkkTkvikkt
                      L V+v++A +Lpp+   ++  +PYVk+++++d++d++k++Tk++kk 
   mKIAA0340   571    LIVNVLQATDLPPRV-DGRPRNPYVKMYFLPDRSDkSKRRTKTVKKL 616  

                   lNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgr..ddflGevs<-*
                   l P+WN+tF++++v+  d+ e++Lei+V+D  r+  ++ +flGe+    
   mKIAA0340   617 LEPKWNQTFVYShVHRRDFRErMLEITVWDQPRVQDeeSEFLGEIL    662  

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