hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mph/mph02448/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0339 ( 822 res) mph02448 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SET SET (Su(var)3-9, Enhancer-of-zeste, Trithora 132.2 5.4e-35 1 PostSET Cysteine-rich motif following a subset of SE 30.0 0.00032 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SET 1/1 683 806 .. 1 114 [] 132.2 5.4e-35 PostSET 1/1 806 822 .] 1 17 [] 30.0 0.00032 Alignments of top-scoring domains: SET: domain 1 of 1, from 683 to 806: score 132.2, E = 5.4e-35 *->aklevfkskgkGwGlratedIpkGefIleyvGeii............ +kl+ +s ++ wGl+a+e+I+++e+++eyvG i++ + ++++ mKIAA0339 683 KKLRFGRSRIHEWGLFAMEPIAADEMVIEYVGQNIrqmvadmrekry 729 .......fylfd.....ciDatranggkGniarfiNHSCePNcelifvev +++ +++ylf+ ++++ iDat+ Gn+arfiNH+C+PNc+++++ + mKIAA0339 730 vqegigsSYLFRvdhdtIIDATK----CGNLARFINHCCTPNCYAKVITI 775 dgfdprgasdsadprivifAlrdIkpGEELtidYgddyege<-* + ++ivi+++++I +EE+t+dY++ +e++ mKIAA0339 776 ES----------QKKIVIYSKQPIGVDEEITYDYKFPLEDN 806 PostSET: domain 1 of 1, from 806 to 822: score 30.0, E = 0.00032 *->kkqpClCGaanCrGfLg<-* +k+pClCG++ CrG L+ mKIAA0339 806 NKIPCLCGTESCRGSLN 822 //