hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02448/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0339  ( 822 res)   mph02448

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET domain                                     176.4    4.7e-49   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SET        1/1     677   806 ..     1   261 []   176.4  4.7e-49

Alignments of top-scoring domains:
SET: domain 1 of 1, from 677 to 806: score 176.4, E = 4.7e-49
                   *->vqkgrwarlegfktegkGwGlratedIpkGefiiEYpGelitseeae
                      ++k r+++l  ++++++ wGl+a+e+I+++e++iEY+G  i++  a+
   mKIAA0339   677    QLKFRKKKLRFGRSRIHEWGLFAMEPIAADEMVIEYVGQNIRQMVAD 723  

                   kreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPtys
                   +re      k+y ++g++s+  Ylf+ d+                     
   mKIAA0339   724 MRE------KRYVQEGIGSS--YLFRVDH--------------------- 744  

                   PlfWseeeleLkGTqllevdkeeleeydllaeeievflqhklFpdveeef
                                                                     
   mKIAA0339     - -------------------------------------------------- -    

                   sfedflWaasivsSRafslvegvnreeensegslelviDAtrkGNiaRFi
                                                     + +iDAt+ GN+aRFi
   mKIAA0339   745 ----------------------------------DTIIDATKCGNLARFI 760  

                   NHSCePNcevqvvfvdgedlgdsdvtDeaglepgdprivlfAlrdIpaGe
                   NH C+PNc+++v++++                 + ++iv++++++I  +e
   mKIAA0339   761 NHCCTPNCYAKVITIE-----------------SQKKIVIYSKQPIGVDE 793  

                   ELtydYgydksnge<-*
                   E+tydY+ ++ +++   
   mKIAA0339   794 EITYDYK-FPLEDN    806  

//