hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08118/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0338  ( 907 res)   mbg08118

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
B41      Band 4.1 homologues                            274.1    1.1e-77   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
B41        1/1     121   316 ..     1   232 []   274.1  1.1e-77

Alignments of top-scoring domains:
B41: domain 1 of 1, from 121 to 316: score 274.1, E = 1.1e-77
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      + k   ++V+lld + +e+ev+++ ++++l++ vc++l+l  +e++y
   mKIAA0338   121    KFKSAICRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNL--LEKDY 165  

                   FgLqfedkdedshWldpaktilkqdvkspksepltlyFRvkFyppdwhgp
                   FgL f+d d+++ Wldp+k+i+kq+++     p+++ F vkFyppd    
   mKIAA0338   166 FGLTFCDADSQKNWLDPSKEIKKQIRS----SPWNFAFTVKFYPPD---- 207  

                   peqlkeDptrynllylQvrddilsGrlpcpseeeallLAaLalqaefGdy
                   p ql+eD+try +l+lQ+r di++Grlpc+ + +++lL+++a+qae+Gdy
   mKIAA0338   208 PAQLTEDITRY-YLCLQLRADIITGRLPCS-FVTHALLGSYAVQAELGDY 255  

                   dpeeeekkkslkhvakelslkrflPkqlldsikasflqiqltlkewrerI
                   d e        +hv +++s+ rf P+q               + e++erI
   mKIAA0338   256 DAE--------EHVGNYVSELRFAPNQ---------------TRELEERI 282  

                   velhkehaglspeeaklkYLelarrLpptYGvelF<-*
                   +elhk ++g++p ea++++Le+a++L  +YGv+l+   
   mKIAA0338   283 MELHKTYRGMTPGEAEIHFLENAKKLS-MYGVDLH    316  

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