hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08118/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0338  ( 907 res)   mbg08118

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Band_41  FERM domain (Band 4.1 family)                  360.2   2.1e-104   1
4_1_CTD  4.1 protein C-terminal domain (CTD)            187.6      2e-52   1
SAB      SAB domain                                     135.7    8.1e-37   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Band_41    1/1     127   316 ..     1   210 []   360.2 2.1e-104
SAB        1/1     506   572 ..     1    72 []   135.7  8.1e-37
4_1_CTD    1/1     803   895 ..     1   114 []   187.6    2e-52

Alignments of top-scoring domains:
Band_41: domain 1 of 1, from 127 to 316: score 360.2, E = 2.1e-104
                   *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd
                      c+vtllD+  +e++veK+  GqvL+d+V++hL+l+EkdYFGL + D 
   mKIAA0338   127    CRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDYFGLTFCD- 172  

                   DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT
                       + +++WLdpsK+i+kQ   + +P+++ F vKFYp+D p++L+++iT
   mKIAA0338   173 ---ADSQKNWLDPSKEIKKQ--IRSSPWNFAFTVKFYPPD-PAQLTEDIT 216  

                   rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC
                   ry+++LQ++ dI +GrlpC+f t +LL+SYaVQ+e+GDY+ ++H      
   mKIAA0338   217 RYYLCLQLRADIITGRLPCSFVTHALLGSYAVQAELGDYDAEEHVGN--- 263  

                   LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk
                     Y+s  +++P    n  q  + ++Ee+I+elHk +rGm+p eAe  +L+
   mKIAA0338   264 --YVSELRFAP----N--Q--TRELEERIMELHKTYRGMTPGEAEIHFLE 303  

                   iArdLemYGVdff<-*
                   +A++L+mYGVd++   
   mKIAA0338   304 NAKKLSMYGVDLH    316  

SAB: domain 1 of 1, from 506 to 572: score 135.7, E = 8.1e-37
                   *->kkkeerlegesiyvrhsnLkleeLDKtQDellKHqASIsELKRtFmE
                      k+ke+++e+e+++ rh   k+e+LDK++D+llKHqASI+ELKRt++E
   mKIAA0338   506    KIKELKPEQETTP-RH---KQEFLDKPEDVLLKHQASINELKRTLKE 548  

                   snStpeprpnEWEREKRLsThSPvr<-*
                   +nS++++r+++W+RE+RL++ SP++   
   mKIAA0338   549 PNSKLIHRDRDWDRERRLPS-SPAS    572  

4_1_CTD: domain 1 of 1, from 803 to 895: score 187.6, E = 2e-52
                   *->keeistksVpivnrevkTiTYesaqvDngadldpGvLltaqtiTsEt
                      ++ei+++s pi++++v T+TY                    ++T+Et
   mKIAA0338   803    ATEIRSLS-PIIGKDVLTSTY--------------------GATAET 828  

                   lSttTTThiTKTvkgGisETriEkrivItgDgDiDhDqaLaqAIkEAkeq
                   lSt+TTTh+TKTvkgG+sETriEkri+ItgD+D+D+DqaLa+AIkEAk q
   mKIAA0338   829 LSTSTTTHVTKTVKGGFSETRIEKRIIITGDEDVDQDQALALAIKEAKLQ 878  

                   hPDMsVtKvvVhqeTei<-*
                   hPDM+VtK+vV++eT++   
   mKIAA0338   879 HPDMLVTKAVVYRETDP    895  

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