hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04504/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0337  ( 1082 res)   mbg04504

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   Guanine nucleotide exchange factor for Rho/R   217.0    1.7e-60   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1      88   271 ..     1   211 []   217.0  1.7e-60

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 88 to 271: score 217.0, E = 1.7e-60
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      v + Ll+TE++YV++L++l++++++pLk+++ +sl  l +p+ v+++
   mKIAA0337    88    VTMTLLDTEQSYVESLRTLMQGYMQPLKQPE-NSL--LCDPSLVDEI 131  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   F   i+e++e+H++FL++   +v+ w               + ++++g++
   mKIAA0337   132 FD-QIPELLEHHEQFLEQVRHCVQTW---------------HAQQKVGAL 165  

                   FlklfsaeeffkiYseYcsnh...pdalellkkLmkkkknpaFqkflkei
                   ++++fs+  + +iYs+Y++n+ + +da+++ k+      +paF kfl++ 
   mKIAA0337   166 LVQSFSKDVLVNIYSAYIDNFlnaKDAVRVAKE-----ARPAFLKFLEQS 210  

                   eskpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedred
                   +++ n +     ++ L++l+ikPvQR+++Y LL+k+llkhtp+dh+d+  
   mKIAA0337   211 MRE-NKE-----KQALSDLMIKPVQRIPRYELLVKDLLKHTPEDHPDHPL 254  

                   LkkAleaikelasqvNe<-*
                   L +A+++ik++a+++N+   
   mKIAA0337   255 LLDAQRNIKQVAERINK    271  

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