hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04504/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0337  ( 1082 res)   mbg04504

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   RhoGEF domain                                  153.8    2.9e-42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1      88   271 ..     1   207 []   153.8  2.9e-42

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 88 to 271: score 153.8, E = 2.9e-42
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskpvltpddietiF
                      v+  ll TE  Yv++L++l ++ym+pL++++ s   + +p  ++ iF
   mKIAA0337    88    VTMTLLDTEQSYVESLRTLMQGYMQPLKQPENSL--LCDPSLVDEIF 132  

                   sNiediyefhreFLkssLearisssqfedlDekkiepsaqrlGdlFlkl.
                     i++++e h +FL      +++++             +q +G+l+ ++ 
   mKIAA0337   133 DQIPELLEHHEQFLE-QVRHCVQTW-----------HAQQKVGALLVQSf 170  

                   .kepflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA
                   +k+   ++Y +Y++n+ +A++ ++    ++++p+F +fl++ + + n++ 
   mKIAA0337   171 sKDVLVNIYSAYIDNFLNAKDAVRV--AKEARPAFLKFLEQSMRE-NKE- 216  

                   kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLkkal
                        k  L++L++kPvqRi+rY+LL+k+LLkhtpe  d+pd+++L +a+
   mKIAA0337   217 -----KQALSDLMIKPVQRIPRYELLVKDLLKHTPE--DHPDHPLLLDAQ 259  

                   dllqdlaksiNe<-*
                   ++++ +a++iN+   
   mKIAA0337   260 RNIKQVAERINK    271  

//