hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg01823/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0336 ( 1693 res) mbg01823 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- GRIP GRIP domain 74.4 2.4e-18 1 SF-assemblin SF-assemblin/beta giardin -78.3 0.17 1 Myosin_tail_1 Myosin tail -528.6 0.6 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SF-assemblin 1/1 120 355 .. 1 248 [] -78.3 0.17 Myosin_tail_1 1/1 430 1242 .. 1 863 [] -528.6 0.6 GRIP 1/1 1621 1668 .. 1 50 [] 74.4 2.4e-18 Alignments of top-scoring domains: SF-assemblin: domain 1 of 1, from 120 to 355: score -78.3, E = 0.17 *->tgtaiKLehvsEkfsgfwtelEnEkqqRRvaeatRfqlikeaiakLE + KLe f+ + +E++ ++ + + a L mKIAA0336 120 EDSVTKLEETHKEFEQSHRNYVKEIESCKNELMAVHSEHSKETAILQ 166 KsleaEvKrRaESdkqiQehFesE..ikklqEriaeqvadmqaalkkAvd K le v + E +q+++ sE++++klqE +++ aa+++ + mKIAA0336 167 KELEEAVHKQVELREQLKSQSDSEdnVRKLQE----EIQNITAAFEEQIS 212 sLserlndlhtnirnEreqrrsdIEhLatslvkkvNelvaaldeErisRk L ++l + + E+ IE +a k +N+ +a + + r+ k mKIAA0336 213 CLEKKLEATSDEKQQEIIHLQKVIEDKAQHYQKDINTFQAEILQLRATHK 262 qeesqilKkvaEdlarisakiDtEKntReaelsalrsEAihevlgnrnla +e + ++ ++++ + +a i + K R a sE ++ + mKIAA0336 263 EEVTELMSQIETSAKEHEAEINKLKENRVTQCEA--SE---NIPEKYQCE 307 dEqFqnlVLdEiaalKealalEreERiaeDDeIVQAvNDYTkALQdGLkl E++ V++ + +E +++ Q+v D ++ L d+Lk mKIAA0336 308 SENLNE-VASDASPESQNCSVALQEDPSAE----QTVCDKVRQLEDSLKE 352 Vnk<-* + mKIAA0336 353 LES 355 Myosin_tail_1: domain 1 of 1, from 430 to 1242: score -528.6, E = 0.6 *->dlerqkreleeqlkrkeselsqlslklEdEqalvaqLqkkikeleaR ++ ++l+e ++ sels + + + l + + i+ l + mKIAA0336 430 QHNKEIQRLQEHHQKEVSELSETFISGSEKEKLALMFE--IQGLKEQ 474 IeELeEeLEaERaARaKaEkqRaDLsrE.....LEeLsERLeEagGaTaa e L+ Ekq L++E+ ++ E L +L E++G+ ++ mKIAA0336 475 CENLQH------------EKQEVVLNYEslremMEILQTELGESAGKISQ 512 QiElnkKREa....EL.aKLR.......rdLEEanlqhEealatLRKKHq +E k a++ +EL++KLR+ ++++ +LE +n +e + L +q mKIAA0336 513 EFETMKQQQAsdvhELqQKLRsafnekdALLETVNRLQGENEKLL--SQQ 560 dainElsdQieqLqKqKakaEKeKsqlqaEvddlaaqldqiaKaKlnaEK + + El +i +Lq ++ +q + + +l a ++++aK+K + + mKIAA0336 561 ELVPELESTIKNLQADNSMYLASLGQKDTMLQELEAKISSLAKEKDDFIS 610 kakqlEsqlsElqvKldElqRqlnDltsqKsRLqsENsdLtrqleEaEaq k+k+ + + +l K + qR +l ++ + ++ Ns+L ++E+ + mKIAA0336 611 KIKTSHEEMDDLHQKWEREQRLSVELREAAGQAAQHNSELRQRVSELTGK 660 vsqlsklKsqlesQLEeAkRslEEEs...........ReRanLqaqlrnl ++ l++ Ksq ++ ++ ++ E+ + +++ ++ e + L ++ +l mKIAA0336 661 LDELVREKSQNDQSITVQMKTMTEDQealsskikslyEENNRLHSEKAQL 710 ehDlDslrEqlEEE.sEAKaeleRqLsKanaeiqqwrsKfEsEgalraEE +Dl++l++q + ++ E ae e++L+ e + + + +E E ++++ + mKIAA0336 711 SRDLEALQAQQDFAhKEHVAEFEKKLQLMVEERDDLNKLLENEQVQKSFV 760 ...lEElKkKlnqki...sElEeaaEaanaKcssLEKtK...sRLqsElE +++l E k l + i +++E+E+ ++ +a sL K K++++ L+ E + mKIAA0336 761 ktqLYEYLKQLRASIleeNEEEDVVKLIQAVGESLVKVKeeeHNLVFEYD 810 DlqievEranaaaseLEKKqknFDKilaEwKkkvdelqaEletAqreaRn + +e+E +++ L q+ + E++ v ++ +E + +e+ + mKIAA0336 811 ARVLELE---NKIKCL---QEDSAVQCEELRTLVRDSEQEKILLRKELDA 854 lstElfrlKneleElkDqvEaLrRENKnLqdEikDLtdqLgEgGRnvHEL + + l l E k ++E EN +L+ ++ +L +L + vH+ mKIAA0336 855 VTSAKEALQLDLLEMKNTNEKASLENQTLSTQVEELSQTLHSRN-EVHD- 902 EKarRrLEaEkdELqaALeEAEaALeqeEsKvlRaqvElsqiRsEiERRL EK++ E+E +L L+q Es + + +El ++ E+ mKIAA0336 903 EKVL-VIEHENLRLL---------LKQRESELQDVRAELILLKDSLEKSP 942 aEKEEEfEntRKnhqraiesLqasLaEaEaKgKaEalRlKKKLEgdInEL K+ ++++++e+ +sL E E K K E + +K KL mKIAA0336 943 SVKD------QLSLVKELEEKIESL-EKESKDKDEKI-SKIKL------- 977 EiaLDhaNkanaeaqKnvKkyqqqvkeLQtqvEeeQRaredareqlavaE +a ka+ e+ n K +q eL++ e R +e l+ aE mKIAA0336 978 -----VAVKAKKELDSNRKEAQTLREELESVRSEKDRLSASMKEFLQGAE 1022 RRataLqaElEELrvaLe.qaeRaRKqAEtElaEaservneLtaqnssLi ++L E + ++L+ eRa + E+ +++ + + t q + L+ mKIAA0336 1023 SYKSLLL-EYDKQSEQLDvEKERA-HNFERHIEDLTKQLRNSTCQYERLT 1070 aqKRKLEgelaalqsDLDEavnElkaAeERakKAqaDaarLaeELrqEQe ++ L +++ +lq+ + E+++ e K ++ + aeEL +EQ mKIAA0336 1071 SDNEDLLARIETLQANA--KLLEAQILEVQKAKGVVEKELDAEELQKEQK 1118 hsqklErlRKqLEsqvKeLqvRLdEaEaaAlkgGKkvIqKLEaRVReLEa +++ ++ ++ eLq +++ k+ Kk+ qK + mKIAA0336 1119 IKEHVSTV-----NELEELQLQFQ-------KE-KKQLQKTMQ------- 1148 ELdgEqRRhaet...qKnlRKaeRrvKELqfQvEEDkKnlerlQDLvDKL EL+ +++++ t+ + + +eR +KEL + l +++ L mKIAA0336 1149 ELELVKKDAQQTtlmNMEIADYERLMKELNQ-------KLTNKNSTIEDL 1191 qaKiKtyK.RQlEEaEEiaqinlsKyRkaQreLEdAEERADqAEsslnkl + +K++K++Q +EEi+ + +Q+ EE + + l k mKIAA0336 1192 EQEMKIQKeKQETLQEEITSLQ----SSVQHY----EEKNTKIKQLLVKT 1233 RqreaKsRr<-* ++ a + mKIAA0336 1234 KKELADAKQ 1242 GRIP: domain 1 of 1, from 1621 to 1668: score 74.4, E = 2.4e-18 *->seaeiEYLrNVllqFlesreSlnaerkqLlkVistvLklseeekkkL s a++EYL+NVll+F++ +++ +er++Ll+Vi t+L+ls+eek+kL mKIAA0336 1621 SVANLEYLKNVLLRFIFLKPG--SERERLLPVIDTMLQLSPEEKGKL 1665 les<-* + + mKIAA0336 1666 ATV 1668 //