hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbf/mbf01556/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0334  ( 857 res)   mbf01556

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HLH      Helix-loop-helix DNA-binding domain             42.7    8.4e-09   1
PAS      PAS fold                                        19.4      0.042   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HLH        1/1      37    87 ..     1    53 []    42.7  8.4e-09
PAS        1/1     111   224 ..     1   123 []    19.4    0.042

Alignments of top-scoring domains:
HLH: domain 1 of 1, from 37 to 87: score 42.7, E = 8.4e-09
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                      +R++ n  E++RRd+ N  + eL ++lP  +  +K++K ++L++ ++
   mKIAA0334    37    KRVSRNKSEKKRRDQFNVLIKELGSMLPG-N-ARKMDKSTVLQKSID 81   

                   YIksLq<-*
                   ++++ +   
   mKIAA0334    82 FLRKHK    87   

PAS: domain 1 of 1, from 111 to 224: score 19.4, E = 0.042
                   *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks
                      e+ + +le+ l+ + +++ + dG i yv+++ ++ll   +++++ +s
   mKIAA0334   111    EFTQLMLEA-LDGFFLAI-MTDGSIIYVSESVTSLLEHLPSDLVDQS 155  

                   lldlipeeddaeclvaelllqaleqgee.rgvevsfrvsgqrflvrdgrp
                   ++ +ipe +++e  v+++l ++l++  + + +    + +       +  +
   mKIAA0334   156 IFNFIPEGEHSE--VYKILSTHLLESDSlTPEYL--KSK-------NQLE 194  

                   ihvevraspvrdag...geilgflgvlrDi<-*
                   +++++ + ++   ++++ e   f+g ++     
   mKIAA0334   195 FCCHMLRGTIDPKEpstYEYVRFIGNFKSL    224  

//