hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg16015/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0333  ( 1201 res)   mbg16015

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TFS2M    Domain in the central regions of transcripti   166.4    2.9e-45   1
PHD      PHD zinc finger                                 54.0      2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1     285   335 ..     1    39 []    54.0    2e-11
TFS2M      1/1     687   788 ..     1   118 []   166.4  2.9e-45

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 285 to 335: score 54.0, E = 2e-11
                   *->yCvCgk....g.llqCdkgCdrwyHv.Clgpple......epdg.wy
                      yC+C++++++  +++Cd +C+ w+H +C+g+++ +++  +   ++++
   mKIAA0333   285    YCICRQphnnRfMICCD-RCEEWFHGdCVGISEArgrlleRNGEdYI 330  

                   CprCk<-*
                   Cp+C+   
   mKIAA0333   331 CPNCT    335  

TFS2M: domain 1 of 1, from 687 to 788: score 166.4, E = 2.9e-45
                   *->dkvRdkcqemLlkalqkesdpeeleaagdekkkltaldptelAvqiE
                      +++R++++e+L+k++++++d  +           t+++  ++A++iE
   mKIAA0333   687    QNIRRSLKEILWKRVNDSDDLIM-----------TENEVGKIALHIE 722  

                   aelfsvlaqdefgttdkkYknKyRSlyfNLKDkkNpdLRrkVLnGEItpe
                   +e+f+     +f+ td++Yk KyRS++fNLKD+kN++L+++VL++EI+++
   mKIAA0333   723 KEMFN-----LFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLA 767  

                   kLvtMtaeELASdeLkelrek<-*
                   kLv+M++eEL S+eL  ++ek   
   mKIAA0333   768 KLVRMKPEELVSKELSMWTEK    788  

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