hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg16015/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0333  ( 1201 res)   mbg16015

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TFIIS_M  Transcription factor S-II (TFIIS), central d   170.3    3.2e-47   1
SPOC     SPOC domain                                    154.5    1.8e-42   1
PHD      PHD-finger                                      67.9    2.2e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1     285   337 ..     1    51 []    67.9  2.2e-16
TFIIS_M    1/1     685   799 ..     1   133 []   170.3  3.2e-47
SPOC       1/1    1070  1176 ..     1   131 []   154.5  1.8e-42

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 285 to 337: score 67.9, E = 2.2e-16
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgpple.....eppegk
                      yC +C++p++    ++++CD C++wfH++C+g+++ +++  e   ++
   mKIAA0333   285    YC-ICRQPHN--NRFMICCDRCEEWFHGDCVGISEArgrllERNGED 328  

                   WlCpeCtpk<-*
                   ++Cp+Ct     
   mKIAA0333   329 YICPNCTIL    337  

TFIIS_M: domain 1 of 1, from 685 to 799: score 170.3, E = 3.2e-47
                   *->tgdsvRdKcrelLddaLvkdsdespkgemesvrntldeVtAcdpekl
                      +++++R +++e+L++++++++d +++++              ++ k+
   mKIAA0333   685    IRQNIRRSLKEILWKRVNDSDDLIMTEN--------------EVGKI 717  

                   AveIEeelfkClfveagttdkkYKnkyRSiifNLkDkkNpdLrrkVlnGe
                   A +IE+e+f+ lf   + td++YK kyRSi+fNLkD+kN++L+++Vl++e
   mKIAA0333   718 ALHIEKEMFN-LF---QVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREE 763  

                   ItPerLatMtpeEmASdeLkkerekitkealrehql<-*
                   I+  +L++M+peE+ S+eL+++ ek+tk+ +++  +   
   mKIAA0333   764 ISLAKLVRMKPEELVSKELSMWTEKPTKSVIESRTK    799  

SPOC: domain 1 of 1, from 1070 to 1176: score 154.5, E = 1.8e-42
                   *->WkGlLalksvadfpikahfvsGdilKeidekvldklLPdedtgpqlr
                      WkG+++++sva+f++ka++vsG      + ++l+++LPd     +++
   mKIAA0333  1070    WKGFINMQSVAKFVTKAYPVSG------CLDYLSEDLPD-----TIH 1105 

                   itgRlrldqvkkylvklrisvtkPNevavvlflPssedisdvssedtnll
                   i+gR+ +++v++y+ kl++sv+k  e+++++f+P++e       e+++ +
   mKIAA0333  1106 IGGRIAPKTVWDYVGKLKSSVSK--ELCLIRFHPATE-------EEEVAY 1146 

                   relvsYLksKqraGvislpergskqngrdlyifP<-*
                    +l+sY++s++r+Gv+++++r    +++dly++P   
   mKIAA0333  1147 ISLYSYFSSRGRFGVVANNNR----HVKDLYLIP    1176 

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