hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph02015/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0331  ( 574 res)   mph02015

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PSI      domain found in Plexins, Semaphorins and Int    49.7    3.9e-10   1
IG       Immunoglobulin                                  29.0    0.00064   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/1     317   372 ..     1    56 []    49.7  3.9e-10
IG         1/1     386   472 ..     1    58 []    29.0  0.00064

Alignments of top-scoring domains:
PSI: domain 1 of 1, from 317 to 372: score 49.7, E = 3.9e-10
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg...erCderrgsr
                      +C+ yg + C++C+lardpy C+W+  +  C+r+ ++++  +rr++r
   mKIAA0331   317    HCDMYG-SACADCCLARDPY-CAWD--GISCSRYyptGAHAKRRFRR 359  

                   qnwssg.pssqCp<-*
                   q++++g+ ++qC    
   mKIAA0331   360 QDVRHGnAAQQCF    372  

IG: domain 1 of 1, from 386 to 472: score 29.0, E = 0.00064
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                       +  ++ e  s  L+C+  +    + W+ +++++ ++   +++++  
   mKIAA0331   386    ERlAYGIESNSTLLECtPRslqaKVIWFvqkgrdvrkeevktddrvv 432  

                   .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   + + +L + +v+++D+   GtY+C+   ++ +++    +tL+V    
   mKIAA0331   433 kmdlgLLFlRVRKSDA---GTYFCQTVehNFVHTV-RKITLEVV    472  

//