hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02015/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0331  ( 574 res)   mph02015

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sema     Sema domain                                    356.7   2.4e-103   1
ig       Immunoglobulin domain                           31.6    1.8e-05   1
V-set    Immunoglobulin V-set domain                     20.4     0.0055   1
PSI      Plexin repeat                                   17.6      0.012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sema       1/1       1   299 [.     1   490 []   356.7 2.4e-103
PSI        1/1     317   372 ..     1    63 []    17.6    0.012
ig         1/1     394   455 ..     1    65 []    31.6  1.8e-05
V-set      1/1     379   472 ..     1   130 []    20.4   0.0055

Alignments of top-scoring domains:
Sema: domain 1 of 1, from 1 to 299: score 356.7, E = 2.4e-103
                   *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek
                                                                     
   mKIAA0331     -    ----------------------------------------------- -    

                   ceeCkmkgkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl
                                                                     
   mKIAA0331     - -------------------------------------------------- -    

                   gdrseaviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL
                                                                     
   mKIAA0331     - -------------------------------------------------- -    

                   YsGtviDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy
                                       I+Rs+g+  ++rTe++d+++l+eP+FV+sy
   mKIAA0331     1 --------------------IFRSMGKLGHIRTEHDDERLLKEPKFVGSY 30   

                   pipyvhsfdDdkVYFFFrEtaveyspnsgkaiysRVaRvCknDvGGrryl
                   +ip+++++dD+k YFFF+E+a e++ n+ ++iy+RV+R+C nD+GG+r l
   mKIAA0331    31 MIPDNEDRDDNKMYFFFTEKALEAE-NNAHTIYTRVGRLCVNDMGGQRIL 79   

                   elnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreLgIs
                   + nkW+TFLKARL+CSvpG++gi+ +yF+eL++vfllpt+++        
   mKIAA0331    80 V-NKWSTFLKARLVCSVPGMNGID-TYFDELEDVFLLPTRDP-------- 119  

                   erdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqsnEg
                    ++pvi+G+F+t+sn+++g    +AVC+++ms Ir++F nGp++h+  Eg
   mKIAA0331   120 -KNPVIFGLFNTTSNIFRG----HAVCVYHMSSIREAF-NGPYAHK--EG 161  

                   pnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfikshpLm
                   p ++w  y+g kvPyPRPG+C+++++g+ y +tkd+PDd++ f++ hpLm
   mKIAA0331   162 PEYHWSLYEG-KVPYPRPGSCASKVNGGKYGTTKDYPDDAIRFARMHPLM 210  

                   devvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGt
                   +++++P+h++P++v+t+++y+l q+aVd rV+a+dGq Y+VlF+GTd G+
   mKIAA0331   211 YQPIKPVHKKPILVKTDGKYNLRQLAVD-RVEAEDGQ-YDVLFIGTDTGI 258  

                   vlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq<-*
                   vl kv+++++++ + +eev+leelq+fkdp  +P+ ++eissk+   
   mKIAA0331   259 VL-KVITIYNQETeWMEEVILEELQIFKDP--APIISMEISSKR    299  

PSI: domain 1 of 1, from 317 to 372: score 17.6, E = 0.012
                   *->nCsqy.tsCssCLaardpfyCgWCssegrC.............trgs
                      +C  y++ C++C +ardp yC+W++   +C++  +++ + +++ r++
   mKIAA0331   317    HCDMYgSACADCCLARDP-YCAWDGI--SCsryyptgahakrrFRRQ 360  

                   aytsfyGeCpraependqwldwswssskCp<-*
                          + +++            + ++C    
   mKIAA0331   361 -------DVRHGN-----------AAQQCF    372  

ig: domain 1 of 1, from 394 to 455: score 31.6, E = 1.8e-05
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                       +s  L C+    ++ +++v W++++++  + ++v+++ + ++ + +
   mKIAA0331   394    SNSTLLECTP---RSLQAKVIWFVQKGrDVrKEEVKTDDRVVKMDLG 437  

                   tsLtitnvtpeDggtYtCvv<-*
                     L +++v+++D+gtY+C+    
   mKIAA0331   438 --LLFLRVRKSDAGTYFCQT    455  

V-set: domain 1 of 1, from 379 to 472: score 20.4, E = 0.0055
                   *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss
                      +    +  +r             + e  s +L Ct++        s 
   mKIAA0331   379    DALDRT-EER----------LAYGIESNSTLLECTPR--------SL 406  

                   gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn
                   +   v+W+  q+                    ++ + +e++ + + + ++
   mKIAA0331   407 QA-KVIWFV-QKG-------------------RDVRKEEVKTDDRVVKMD 435  

                   pskgdfsLtIsnlqlsDsGtYyCa.........gggtrLtVl<-*
                    +     L   +++ sD GtY+C++ +++  ++   ++L V+   
   mKIAA0331   436 LG-----LLFLRVRKSDAGTYFCQtvehnfvhtVRKITLEVV    472  

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