hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj34062/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0327  ( 933 res)   mfj34062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CA       Cadherin repeats.                              432.6     2e-125   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CA         1/6      32   132 ..     1   121 []    15.3    0.076
CA         2/6     156   241 ..     1   121 []    89.8  3.3e-22
CA         3/6     265   346 ..     1   121 []    93.6  2.4e-23
CA         4/6     370   451 ..     1   121 []    83.8    2e-20
CA         5/6     475   561 ..     1   121 []   103.7  2.2e-26
CA         6/6     592   670 ..     1   121 []    58.7  7.5e-13

Alignments of top-scoring domains:
CA: domain 1 of 6, from 32 to 132: score 15.3, E = 0.076
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..................
                      ++ + + +   ++ g       v+  i+ + + ++++  +++ +  +
   mKIAA0327    32    IRYSVPEE---TDKGT------VVGNISKdlgleprelaergvrivs 69   

                   .....lFsIdpetGtngpsLvkleiiitttkpLDREeqflkreqtdeseY
                   +++++lFs++p++G            ++t++++DREe + +         
   mKIAA0327    70 rgrsqLFSLNPRGG-----------SLVTAGRIDREELCAQSTP---CLV 105  

                   tLtveAtDgGgpppgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                   ++++ +  +G                  +     v ++++D+NDN P   
   mKIAA0327   106 NINILVEEKG------------------KL--FGVEIEITDINDNNP    132  

CA: domain 2 of 6, from 156 to 241: score 89.8, E = 3.3e-22
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetG...tngp
                        A+D+D g    N+        +Y+++++++Fs++ +tG+++t++p
   mKIAA0327   156    PEAVDPDVG---INSL------QSYQLSPnrHFSLHLQTGddgTINP 193  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          ++++ ++LDREe          ++++L+ +A+DgG+p+     
   mKIAA0327   194 -------ELVLERTLDREEE---------PTHHLVLTASDGGEPR----- 222  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +ssta +++tVlD NDNaP   
   mKIAA0327   223 ----------RSSTALIQITVLDTNDNAP    241  

CA: domain 3 of 6, from 265 to 346: score 93.6, E = 2.4e-23
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      v+A+D+D+g    Ngk      vtY +   +++++ lF+++++tG  
   mKIAA0327   265    VRASDPDEG---VNGK------VTYKFRKinekqslLFHLHENTG-- 300  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                            + t++k LD+Ee          s Y+++++A D G      
   mKIAA0327   301 ---------EMTVAKNLDYEEC---------SLYEMEIQAEDVGA----- 327  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                               l + + v++ V+DvNDN+P   
   mKIAA0327   328 ------------LLGRSKVIIMVEDVNDNRP    346  

CA: domain 4 of 6, from 370 to 451: score 83.8, E = 2e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      ++++D Dsg    Ng+      v++   ++ +F+++++  +      
   mKIAA0327   370    LNVHDQDSG---KNGQ------VVCYTHDnlPFKLEKSIDN------ 401  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     ++ ++t k LDRE+          s+Y++tv+A+D G pp        
   mKIAA0327   402 --YYRLVTWKYLDREKV---------STYNITVIASDLGAPP-------- 432  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          ls+++ +  tV D NDN+P   
   mKIAA0327   433 -------LSTETYIALTVADTNDNPP    451  

CA: domain 5 of 6, from 475 to 561: score 103.7, E = 2.2e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      ++A+D+Ds    eN++      vtYs+++++ ++ + +++ sI+++t
   mKIAA0327   475    LTAHDPDSQ---ENAQ------VTYSVSEdtiqgvplssYISINSDT 512  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G           i+++++++D+E++         +  +L v+AtD+G+pp
   mKIAA0327   513 G-----------ILYALQSFDFEKI---------QDLQLLVIATDSGSPP 542  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  lss++++  +VlD+NDNaP   
   mKIAA0327   543 ---------------LSSNVSLSLFVLDQNDNAP    561  

CA: domain 6 of 6, from 592 to 670: score 58.7, E = 7.5e-13
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v+A+D+Dsg   +N++      ++Y++l  ++++lFs+  +tG    
   mKIAA0327   592    VVAVDKDSG---QNAW------LSYRLLKasepgLFSVGLHTG---- 625  

                   sLvkleiiittt.kpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                          +++t+++ LDR++          +  +L+  ++D+G+pp    
   mKIAA0327   626 -------EVRTArALLDRDAL---------K-QNLVMAVQDHGQPP---- 654  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              ls+t+t+tv V       P   
   mKIAA0327   655 -----------LSATVTLTVAVAN---SIP    670  

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