hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mib/mib10041/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0326 ( 885 res) mib10041 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 411.6 4.3e-119 19 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/19 167 189 .. 1 23 [] 31.9 8.7e-05 ZnF_C2H2 2/19 195 217 .. 1 23 [] 26.2 0.0046 ZnF_C2H2 3/19 223 245 .. 1 23 [] 31.2 0.00014 ZnF_C2H2 4/19 251 273 .. 1 23 [] 28.9 0.00069 ZnF_C2H2 5/19 279 301 .. 1 23 [] 23.3 0.033 ZnF_C2H2 6/19 307 329 .. 1 23 [] 30.4 0.00025 ZnF_C2H2 7/19 335 357 .. 1 23 [] 30.5 0.00023 ZnF_C2H2 8/19 363 385 .. 1 23 [] 27.2 0.0022 ZnF_C2H2 9/19 391 413 .. 1 23 [] 30.6 0.00021 ZnF_C2H2 10/19 419 441 .. 1 23 [] 31.3 0.00013 ZnF_C2H2 11/19 447 469 .. 1 23 [] 24.2 0.018 ZnF_C2H2 12/19 475 497 .. 1 23 [] 28.6 0.00088 ZnF_C2H2 13/19 503 525 .. 1 23 [] 33.6 2.6e-05 ZnF_C2H2 14/19 531 553 .. 1 23 [] 22.3 0.067 ZnF_C2H2 15/19 586 608 .. 1 23 [] 23.9 0.022 ZnF_C2H2 16/19 679 701 .. 1 23 [] 25.6 0.0069 ZnF_C2H2 17/19 731 753 .. 1 23 [] 27.3 0.0022 ZnF_C2H2 18/19 784 806 .. 1 23 [] 25.8 0.0058 ZnF_C2H2 19/19 858 880 .. 1 23 [] 17.0 2.6 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 19, from 167 to 189: score 31.9, E = 8.7e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgksfs+++ L rH+r+H mKIAA0326 167 YICNE-CGKSFSQWsKLLRHQRIH 189 ZnF_C2H2: domain 2 of 19, from 195 to 217: score 26.2, E = 0.0046 *->ykCpigCgksfssk.aLkrHmrvH<-* +C++ Cgksf++ ++L++H+r+H mKIAA0326 195 NTCSE-CGKSFTQSsHLVQHQRTH 217 ZnF_C2H2: domain 3 of 19, from 223 to 245: score 31.2, E = 0.00014 *->ykCpigCgksfssk.aLkrHmrvH<-* ykCp Cgk+fs+ ++L++H+r+H mKIAA0326 223 YKCPD-CGKCFSWSsNLVQHQRTH 245 ZnF_C2H2: domain 4 of 19, from 251 to 273: score 28.9, E = 0.00069 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C k f++ ++L++H+r+H mKIAA0326 251 YKCTE-CEKAFTQStNLIKHQRSH 273 ZnF_C2H2: domain 5 of 19, from 279 to 301: score 23.3, E = 0.033 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + C + f + ++L++H+ +H mKIAA0326 279 YKCGE-CRRAFYRSsDLIQHQATH 301 ZnF_C2H2: domain 6 of 19, from 307 to 329: score 30.4, E = 0.00025 *->ykCpigCgksfssk.aLkrHmrvH<-* ykCp+ Cgk+f + ++L +H+++H mKIAA0326 307 YKCPE-CGKRFGQNhNLLKHQKIH 329 ZnF_C2H2: domain 7 of 19, from 335 to 357: score 30.5, E = 0.00023 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksf + ++L++H+r+H mKIAA0326 335 YRCTE-CGKSFIQSsELTQHQRTH 357 ZnF_C2H2: domain 8 of 19, from 363 to 385: score 27.2, E = 0.0022 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgksf + + L++H+r+H mKIAA0326 363 YECLE-CGKSFGHSsTLIKHQRTH 385 ZnF_C2H2: domain 9 of 19, from 391 to 413: score 30.6, E = 0.00021 *->ykCpigCgksfssk.aLkrHmrvH<-* +kCp+ Cgk+f+ L rH+r+H mKIAA0326 391 FKCPV-CGKTFTLSaTLLRHQRTH 413 ZnF_C2H2: domain 10 of 19, from 419 to 441: score 31.3, E = 0.00013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykCp+ Cgksfs ++L++H+r+H mKIAA0326 419 YKCPE-CGKSFSVSsNLINHQRIH 441 [output cut off at A = 10 top alignments] //