hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mib/mib10041/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0326 ( 885 res) mib10041 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 518.6 4.5e-152 19 PhnA_Zn_Ribbon PhnA Zinc-Ribbon 14.4 0.07 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-C2H2 1/19 167 189 .. 1 24 [] 39.6 6.9e-08 zf-C2H2 2/19 195 217 .. 1 24 [] 32.6 8.9e-06 zf-C2H2 3/19 223 245 .. 1 24 [] 41.3 2.2e-08 zf-C2H2 4/19 251 273 .. 1 24 [] 36.5 6.1e-07 zf-C2H2 5/19 279 301 .. 1 24 [] 31.2 2.3e-05 zf-C2H2 6/19 307 329 .. 1 24 [] 36.9 4.7e-07 zf-C2H2 7/19 335 357 .. 1 24 [] 38.6 1.4e-07 zf-C2H2 8/19 363 385 .. 1 24 [] 36.0 8.4e-07 zf-C2H2 9/19 391 413 .. 1 24 [] 38.3 1.8e-07 PhnA_Zn_Ribbon 1/2 384 429 .. 1 43 [] 9.3 0.38 zf-C2H2 10/19 419 441 .. 1 24 [] 41.3 2.1e-08 zf-C2H2 11/19 447 469 .. 1 24 [] 35.3 1.4e-06 zf-C2H2 12/19 475 497 .. 1 24 [] 37.7 2.7e-07 zf-C2H2 13/19 503 525 .. 1 24 [] 42.6 8.8e-09 PhnA_Zn_Ribbon 2/2 500 541 .. 1 43 [] 6.2 1.1 zf-C2H2 14/19 531 553 .. 1 24 [] 24.9 0.0018 zf-C2H2 15/19 586 608 .. 1 24 [] 21.2 0.024 zf-C2H2 16/19 679 701 .. 1 24 [] 28.0 0.00021 zf-C2H2 17/19 731 753 .. 1 24 [] 31.5 1.9e-05 zf-C2H2 18/19 784 806 .. 1 24 [] 27.2 0.00038 zf-C2H2 19/19 858 880 .. 1 24 [] 9.5 12 Alignments of top-scoring domains: zf-C2H2: domain 1 of 19, from 167 to 189: score 39.6, E = 6.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksFs++s L rH+r+H mKIAA0326 167 YICN-ECGKSFSQWSKLLRHQRIH 189 zf-C2H2: domain 2 of 19, from 195 to 217: score 32.6, E = 8.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +CgksF+++s+L +H+rtH mKIAA0326 195 NTCS-ECGKSFTQSSHLVQHQRTH 217 zf-C2H2: domain 3 of 19, from 223 to 245: score 41.3, E = 2.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp dCgk+Fs +snL +H+rtH mKIAA0326 223 YKCP-DCGKCFSWSSNLVQHQRTH 245 zf-C2H2: domain 4 of 19, from 251 to 273: score 36.5, E = 6.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F+++ nL +H+r+H mKIAA0326 251 YKCT-ECEKAFTQSTNLIKHQRSH 273 zf-C2H2: domain 5 of 19, from 279 to 301: score 31.2, E = 2.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +C ++F r+s+L +H+ tH mKIAA0326 279 YKCG-ECRRAFYRSSDLIQHQATH 301 zf-C2H2: domain 6 of 19, from 307 to 329: score 36.9, E = 4.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +Cgk+F +++nL +H+++H mKIAA0326 307 YKCP-ECGKRFGQNHNLLKHQKIH 329 zf-C2H2: domain 7 of 19, from 335 to 357: score 38.6, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF ++s+L++H+rtH mKIAA0326 335 YRCT-ECGKSFIQSSELTQHQRTH 357 zf-C2H2: domain 8 of 19, from 363 to 385: score 36.0, E = 8.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF ++s+L +H+rtH mKIAA0326 363 YECL-ECGKSFGHSSTLIKHQRTH 385 zf-C2H2: domain 9 of 19, from 391 to 413: score 38.3, E = 1.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +Cgk+F+ +++L rH+rtH mKIAA0326 391 FKCP-VCGKTFTLSATLLRHQRTH 413 PhnA_Zn_Ribbon: domain 1 of 2, from 384 to 429: score 9.3, E = 0.38 *->tllRcqP.kCPkCnSeytYtvyavpps.tedgal.lvCpeCahEWs< t lR +P kCP C+ +t+++ + ++t+ g+ ++ CpeC+ +s mKIAA0326 384 THLREDPfKCPVCGKTFTLSATLLRHQrTHTGERpYKCPECGKSFS 429 -* mKIAA0326 - - zf-C2H2: domain 10 of 19, from 419 to 441: score 41.3, E = 2.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +CgksFs +snL +H+r+H mKIAA0326 419 YKCP-ECGKSFSVSSNLINHQRIH 441 zf-C2H2: domain 11 of 19, from 447 to 469: score 35.3, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C dCgksF +s+L rH+r+H mKIAA0326 447 YICA-DCGKSFIMSSTLIRHQRIH 469 zf-C2H2: domain 12 of 19, from 475 to 497: score 37.7, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgksF r+s+L +H+rtH mKIAA0326 475 YKCS-DCGKSFIRSSHLIQHRRTH 497 zf-C2H2: domain 13 of 19, from 503 to 525: score 42.6, E = 8.8e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +CgksFs++snL +H rtH mKIAA0326 503 YKCP-ECGKSFSQSSNLITHVRTH 525 PhnA_Zn_Ribbon: domain 2 of 2, from 500 to 541: score 6.2, E = 1.1 *->tllRcqP.kCPkCnSeytYtvyavpps...tedgallvCpeCahEWs + P kCP+C+ ++ + + ++ d l+vC++C+ + mKIAA0326 500 EK----PyKCPECGKSFSQ-SSNLITHvrtHMDENLFVCSDCGKAFL 541 <-* mKIAA0326 - - zf-C2H2: domain 14 of 19, from 531 to 553: score 24.9, E = 0.0018 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCgk+F +L++H+ +H mKIAA0326 531 FVCS-DCGKAFLEAQELEQHRVIH 553 zf-C2H2: domain 15 of 19, from 586 to 608: score 21.2, E = 0.024 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgk F++ + + +H+r+H mKIAA0326 586 HKCL-VCGKGFNDEGIFMQHQRIH 608 zf-C2H2: domain 16 of 19, from 679 to 701: score 28.0, E = 0.00021 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+sF +++ L +H+ tH mKIAA0326 679 YVCS-HCGESFLDRAVLLQHQLTH 701 zf-C2H2: domain 17 of 19, from 731 to 753: score 31.5, E = 1.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +C+ksF +s+L +H+++H mKIAA0326 731 FKCP-ECKKSFGLSSELLQHQKVH 753 zf-C2H2: domain 18 of 19, from 784 to 806: score 27.2, E = 0.00038 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCg sF ++ L+rH+ tH mKIAA0326 784 YSCS-DCGASFLDRLALTRHQETH 806 zf-C2H2: domain 19 of 19, from 858 to 880: score 9.5, E = 12 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp +Cg F+ ++L H+ H mKIAA0326 858 FLCP-ECGDGFTEVATLLLHRSCH 880 //