hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00515/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0325  ( 1999 res)   mbg00515

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AAA      ATPases associated with a variety of cellula    30.6    0.00021   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AAA        1/1     282   448 ..     1    92 []    30.6  0.00021

Alignments of top-scoring domains:
AAA: domain 1 of 1, from 282 to 448: score 30.6, E = 0.00021
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge....ggqrirl
                      p +++ll+G +G+GKTTl r +a+  g +v+ i   ++  g++  ++
   mKIAA0325   282    PQGHLLLIGVSGAGKTTLSRFVAWMNGLSVYQIKVHrkytGEDFDED 328  

                   alalark.......dvlllDEitslld.......................
                   +++ +r+++ ++ +   ++DE + l  + +++ + ++ +++  ++ ++++
   mKIAA0325   329 LRTVLRRsgcknekIAFIMDESNVLDSgflermntllangevpglfegde 378  

                   ....................................vtviattn.....d
                      +  + +++ +++++ +++++++ +   ++  ++++v++t+n+++++ 
   mKIAA0325   379 yatlmtqckegaqkeglmldsheelykwftsqvirnLHVVFTMNpssegL 428  

                   ldpallrrrfdrrivllril<-*
                   +d+a++ +++  r vl   +   
   mKIAA0325   429 KDRAATSPALFNRCVLNWFG    448  

//