hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00515/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0325  ( 1999 res)   mbg00515

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Dynein_heavy Dynein heavy chain                        1238.2          0   1
AAA_5        ATPase family associated with various ce    -6.6      0.073   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
AAA_5          1/1     285   450 ..     1   184 []    -6.6    0.073
Dynein_heavy   1/1    1268  1998 ..     1   783 []  1238.2        0

Alignments of top-scoring domains:
AAA_5: domain 1 of 1, from 285 to 450: score -6.6, E = 0.073
                   *->pvlLvGppGtGKtelaerLaaalsgqggrpvfyvqltrdtteedllg
                      ++lL+G +G GKt+l++ +a +     g +v  +  +r +t ed+  
   mKIAA0325   285    HLLLIGVSGAGKTTLSRFVAWMN----GLSVYQIKVHRKYTGEDF-- 325  

                   rrniaplleGngttswvdgpLvrAaryaretegslpeghilvlDEinras
                                    d  L + +r    ++g   e+   + DE n ++
   mKIAA0325   326 -----------------DEDLRTVLR----RSGCKNEKIAFIMDESNVLD 354  

                   pevlnvLl.........slLderrlllpdggelvkvppydklaerg.ree
                   + +l+++++   +++ ++l++  ++    + + +k  +  + +  +++ee
   mKIAA0325   355 SGFLERMNtllangevpGLFEGDEYA--TLMTQCKEGAQKEGLMLDsHEE 402  

                   ldlwklgrl.ihdfrlIatsNpld.gprglnelsaALrrRFlfvtvdpp<
                   l  w    +  +   +++t+Np  +g ++++  s+AL  R+++ ++ +  
   mKIAA0325   403 LYKWFTSQViRN-LHVVFTMNPSSeGLKDRAATSPALFNRCVLNWFGDW  450  

                   -*
                     
   mKIAA0325     -    -    

Dynein_heavy: domain 1 of 1, from 1268 to 1998: score 1238.2, E = 0
                   *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk
                      + ++ ++pk + l+++q +++ rLs+   ++ ++d ++k ++d+++ 
   mKIAA0325  1268    VLSAGSTPKIQGLTVEQAEAVVRLSC---LPAFKDLIAKVQADEQFG 1311 

                   kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty
                    w+ds++P  e+++P+ W +e++ +   ++ +a+++Lll++a+RPDRl++
   mKIAA0325  1312 IWLDSSSP--EQTVPYLWSEETPTT---PIGQAIHRLLLIQAFRPDRLLA 1356 

                   alrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDPsk
                   ++++Fv+++L+++++  +++pldl++i+++e++p+tP+l++++PG+D+s+
   mKIAA0325  1357 MAHMFVSTNLGESFMSIMEQPLDLTHIVGTEVKPNTPVLMCSVPGYDASG 1406 

                   dvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVlLQ
                   +ve+LA +++      ++++Si++G+++g+n+A+kaI+tA+ksG+WV+L+
   mKIAA0325  1407 HVEDLAAEQN------TQITSIAIGSAEGFNQADKAINTAVKSGRWVMLK 1450 

                   NiHLaasWLptLEKkLesltppegtHpdFRLFLTaEpaprPeehIfPigl
                   N+HLa++WL++LEKkL+sl+p    H++FRLFLT+E++p+     +P++l
   mKIAA0325  1451 NVHLAPGWLMQLEKKLHSLQP----HACFRLFLTMEINPK-----VPVNL 1491 

                   LqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrllFlL
                   L++++++++EPP+G+KAN+lr++s+     +++ + ck p+e++rl+FlL
   mKIAA0325  1492 LRAGRIFVFEPPPGVKANMLRTFSS-----IPVSRICKSPNERARLYFLL 1536 

                   CfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakGRqNi
                   ++FHA++qER+++ PlGW+k+YEF+esDLr ++d++d++L+++akGRqNi
   mKIAA0325  1537 AWFHAIIQERLRYAPLGWSKKYEFGESDLRSACDTVDTWLDDTAKGRQNI 1586 

                   dpdkvPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfdgnad
                   +pdk+PW aL++l+ + +YGGr+++++D+RLL+t+Le++ft+++fd+  +
   mKIAA0325  1587 SPDKIPWSALKTLMAQSIYGGRVDNEFDQRLLNTFLERLFTTRSFDS--E 1634 

                   yeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpNAEIg
                   ++La+k+dg++++++P++ ++ee+++++e  LP+ ++P ++GL++NAE++
   mKIAA0325  1635 FKLACKVDGHKDIQMPDGIRREEFVQWVEL-LPDAQTPSWLGLPNNAERV 1683 

                   fltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkqvlrd
                   +lt+++ ++i+++l++Q+ e++++l++ ++ek+ r++++s + +++++r+
   mKIAA0325  1684 LLTTQGVDMISKMLKMQMLEDEDDLAYAETEKKARTDSTS-DGRPAWMRT 1732 

                   ileklpkklCqklFdkeelmlkrt.eeikdPlfvVlvQEiermNkLlkei
                   +++++ ++l  +l+++++++lkrt e+ikdPlf+++++E++++ kLl+++
   mKIAA0325  1733 LHTTASNWL--HLIPQTLSPLKRTvENIKDPLFRFFEREVKMGAKLLQDV 1780 

                   rrSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakksyPslkpL
                   r++L+++ ++++G+++++n+l++li++L++g++P+  +W ++++P+ +++
   mKIAA0325  1781 RQDLADVVQVCEGKKKQTNYLRTLINELVKGILPR--SWSHYTVPAGMTV 1828 

                   gsWvtDLlkRirQLqeWteds..GGAklglPkvvWLsGFFnPQsFLTAim
                    +Wv+D+++Ri+QLq++++ + +GGAk++++++v+L+G+F+P++++TA++
   mKIAA0325  1829 IQWVSDFSERIKQLQNISQAAasGGAKELKNIHVCLGGLFVPEAYITATR 1878 

                   QsvARknkwPLDkLcLdteVtkkekeeqdskepPedGvyVhGLfLEGArW
                   Q+vA++n w+L++LcL+++Vt  +++ +++    ++++ V+GL L+GA++
   mKIAA0325  1879 QYVAQANSWSLEELCLEVNVT-ASQSATLD----ACSFGVTGLKLQGATC 1923 

                   DsktgllaeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaRg
                    + ++l + + ++++++  ++ w+k+++a    ++++v+++PVY++++R 
   mKIAA0325  1924 SN-NKLSLSNAISTVLPLTQLRWVKQTSA---EKKASVVTLPVYLNFTRA 1969 

                   gvLSTTGHStnyvftfnLktkedtpaskWilaGVALllq<-*
                   +        +++ ++f+++tke  +++  + +GVA+l++   
   mKIAA0325  1970 D--------LIFTVDFEIATKE--DPRSFYERGVAVLCT    1998 

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