hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg09941/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0319 ( 1083 res) mbg09941 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PKD Repeats in polycystic kidney disease 1 (PKD1 182.3 4.5e-50 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PKD 1/5 347 438 .. 1 91 [] 3.6 6.9 PKD 2/5 446 535 .. 1 91 [] 48.0 1.3e-09 PKD 3/5 541 631 .. 1 91 [] 37.0 2.5e-06 PKD 4/5 632 725 .. 1 91 [] 51.4 1.2e-10 PKD 5/5 731 822 .. 1 91 [] 48.7 7.8e-10 Alignments of top-scoring domains: PKD: domain 1 of 5, from 347 to 438: score 3.6, E = 6.9 *->vadftasptvgvksiAagesVtFtass.StdedGsivsytW...... +++ + ++ + +++ + as++ + ++ +sy+W+ +++ mKIAA0319 347 AVSAGDNLVLTL----PDREAELKASVePAPPADTTYSYEWslmshp 389 .dFGDGsatsstg..ptvtHtYtkpGtYtVtLtvtnavGnssssatktvv dF G + +++pt ++ +++G Y +++ v+ ++ + ++v+ mKIAA0319 390 vDF-QG--KIKQEnkPTLHLSQLSVGLYAFRVAVSSEN--AFGEGYVNVT 434 Vvvp<-* V + mKIAA0319 435 VMPA 438 PKD: domain 2 of 5, from 446 to 535: score 48.0, E = 1.3e-09 *->vadftasptvgvksiAagesVtFtass.StdedGsivsytWdFGDGs va+++++ +++ ++++ + + s+Std++ ivsy+W DG mKIAA0319 446 VAVVSPQTQELS----VPLTSALIDGSqSTDDTE-IVSYHWEEVDGP 487 ..atsstg..ptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp< ++ +++p ++ + pG+Yt++Lt t+++G +++s+t+++v+ + mKIAA0319 488 flGEEFPAdtPILRLSNLVPGNYTFRLTITDSDG-ATNSTTASLVIRDA 535 -* mKIAA0319 - - PKD: domain 3 of 5, from 541 to 631: score 37.0, E = 2.5e-06 *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGsa va++ ++ t ++ ++ ++ +++ + +++d+ iv y+W G G mKIAA0319 541 VANAGPNQTITL----PQNTIILNGNQ-SSDDHQIVLYEWFAGPG-- 580 tsstgptvtHtYtkp..........GtYtVtLtvtnavGnssssatktvv +++ +++ +++ + ++ ++G+Yt++L vt++ G + s+a + v+ mKIAA0319 581 --GESKEMVMQGAQTpylhlselqeGEYTFQLMVTDSSG-QQSTALVAVT 627 Vvvp<-* V+ + mKIAA0319 628 VQAE 631 PKD: domain 4 of 5, from 632 to 725: score 51.4, E = 1.2e-10 *->vadftasptvgvks.iAagesVtFtassStdedGsivsytWdFGDGs + ++ +++ ++ k+ +++ +s+t+++s S+d+ G iv y+W + G mKIAA0319 632 NNQAPVAVAGPDKElVFPVQSATLDGSRSSDDHG-IVCYHWEHIRGP 677 ....atsstgptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp< + +++ + +t+t +++G Y+++Ltv + +G +ss+ t tv V+ + mKIAA0319 678 saveMENVDKAIATVTGLQVGIYHFRLTVRDQQG-LSSTSTLTVAVKKE 725 -* mKIAA0319 - - PKD: domain 5 of 5, from 731 to 822: score 48.7, E = 7.8e-10 *->vadftasptvgvksiAagesVtFtassStdedGsivsytW....... +a++ + + ++ s+t+++s Std+ G ivsy+W ++++++ mKIAA0319 731 RAQAGGRHVLIL----PNNSITLDGSRSTDDRG-IVSYLWirdgqsp 772 ...dFGDGsatsstgptvtHtYtkpGtYtVtLtvtnavGnssssatktvv +d+++G s + + +t + +G Yt++L vt+++G +s+s+ +tv+ mKIAA0319 773 aagDVIGG---SDHRAALQLTNLVEGVYTFHLLVTDSQG-ASDSDAATVE 818 Vvvp<-* V + mKIAA0319 819 VLPD 822 //