hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg14966/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0318 ( 884 res) mbg14966 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SH3_2 Variant SH3 domain 158.8 9.5e-44 3 SH3_1 SH3 domain 71.1 2.3e-17 2 fn3 Fibronectin type III domain 42.0 1.3e-08 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SH3_2 1/3 6 58 .. 1 69 [] 29.1 0.0001 fn3 1/3 123 206 .. 1 84 [] 9.3 0.19 fn3 2/3 217 289 .. 1 84 [] 19.7 0.018 fn3 3/3 313 402 .. 1 84 [] 13.4 0.074 SH3_1 1/2 683 746 .. 1 58 [] 20.2 0.0014 SH3_2 2/3 684 746 .. 1 69 [] 64.2 2.8e-15 SH3_1 2/2 787 849 .. 1 58 [] 50.9 2.8e-11 SH3_2 3/3 788 849 .. 1 69 [] 65.4 1.2e-15 Alignments of top-scoring domains: SH3_2: domain 1 of 3, from 6 to 58: score 29.1, E = 0.0001 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl +++ +++n+ e+eL l++G ++v+ g++d dg+++ mKIAA0318 6 ------PFDG-PNENP---EAELPLTAGKYLYVY---GDMDEDGFYE 39 geslggGrrrRGlvPssaveel<-* ge+ +G+r GlvPs++v + mKIAA0318 40 GEL-LDGQR--GLVPSNFVDFI 58 fn3: domain 1 of 3, from 123 to 206: score 9.3, E = 0.19 *->PsaPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkngg + P+ +t + + + s+ + W+pp ++g g++++Y+v + ++ + mKIAA0318 123 VPYPRKITLIKQLAKSVIVGWEPPAvppGWGTVSSYNVLV-DKETRM 168 ewneltvpgtttsytltgL.kPgteYevrVqAvnggG.GpeS<-* +l + + t + ++ L+++ +Y ++Vq v+ +G++ e mKIAA0318 169 ---SLALGRRT-KALIEKLnTAACTYRISVQCVTSRGnSDEL 206 fn3: domain 2 of 3, from 217 to 289: score 19.7, E = 0.018 *->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn aP++l+v ++t s++lsW p n+ +++ + ++ + mKIAA0318 217 VVAPSQLRVDNITQISAQLSWLPT--NSNYSH--IIF-LNEEEL--- 255 eltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-* +v+ + y++ +L+P++ Y+v+V A+ + ++ mKIAA0318 256 -DIVKAARYKYQFFNLRPNMAYKVKVLAQPHQ--MPW 289 fn3: domain 3 of 3, from 313 to 402: score 13.4, E = 0.074 *->PsaPtnltvtdv.tstsltlsWsppt.......gngpitgYevtyRq P +P+++tv + t+ s+++sW+pp ++++ ++++ +tgY v + mKIAA0318 313 PAPPQDVTVHAGaTAASVQVSWKPPAltptglsNGANVTGYGVYA-K 358 pknggewneltvpgttt.sytltgLkPgteYevrVqAvnggG.GpeS<-* ++ e t +gt+ + l+ L++ v+V++++ +G+++ S mKIAA0318 359 GQRVAEVIAPTADGTAVeLIRLRSLEAKA---VSVRTLSVQGeSMDS 402 SH3_1: domain 1 of 2, from 683 to 746: score 20.2, E = 0.0014 *->kkvvALYDYeare........sdELsFkkGDvitvleksdd.gWWkg +++vAL+DY++ + +++++ ++EL+Fk+G +i+v ++d++g ++g mKIAA0318 683 RIFVALFDYDPLTmspnpdaaEEELPFKEGQIIKVYGDKDAdGFYRG 729 rlkgtgGkeGliPsNYVepv<-* + + GliP+N V ++ mKIAA0318 730 ETCA---RLGLIPCNMVSEI 746 SH3_2: domain 2 of 3, from 684 to 746: score 64.2, E = 2.8e-15 *->ygraiedyvaAtdknenl..eeeeLslkkGdvvkvidvggskdddgw ++a++dy++ +++n++ +eeeL +k+G+++kv+ g+kd dg+ mKIAA0318 684 IFVALFDYDP-LTMSPNPdaAEEELPFKEGQIIKVY---GDKDADGF 726 wlgeslggGrrrRGlvPssaveel<-* ++ge+ r Gl+P ++v+e+ mKIAA0318 727 YRGET--CARL--GLIPCNMVSEI 746 SH3_1: domain 2 of 2, from 787 to 849: score 50.9, E = 2.8e-11 *->kkvvALYDYeare.......sdELsFkkGDvitvleksdd.gWWkgr ++ vALYDY++re++++ + + EL+F GD+itv + d++g ++g+ mKIAA0318 787 RRMVALYDYDPREsspnvdvEAELPFCTGDIITVFGEIDEdGFYYGE 833 lkgtgGkeGliPsNYVepv<-* l+ G++Gl+PsN++e+v mKIAA0318 834 LN---GQKGLVPSNFLEEV 849 SH3_2: domain 3 of 3, from 788 to 849: score 65.4, E = 1.2e-15 *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkvidvggskdddgww +++a+ dy++ + ++n ++e+eL ++ Gd++ v+ g+ d dg++ mKIAA0318 788 RMVALYDYDP-RESSPNVdVEAELPFCTGDIITVF---GEIDEDGFY 830 lgeslggGrrrRGlvPssaveel<-* +ge+ +G++ GlvPs+++ee+ mKIAA0318 831 YGEL--NGQK--GLVPSNFLEEV 849 //