hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03309/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0315  ( 1299 res)   mbg03309

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IPT      ig-like, plexins, transcription factors        104.2    1.5e-26   2
PSI      domain found in Plexins, Semaphorins and Int    94.2    1.6e-23   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/3      76   127 ..     1    56 []    49.5  4.3e-10
PSI        2/3     222   275 ..     1    56 []    18.7     0.56
PSI        3/3     367   410 ..     1    56 []    41.3  1.3e-07
IPT        1/2     448   534 ..     1   111 []    68.3  9.5e-16
IPT        2/2     536   647 ..     1   111 []    35.5  7.4e-06

Alignments of top-scoring domains:
PSI: domain 1 of 3, from 76 to 127: score 49.5, E = 4.3e-10
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                      +C  y   +C++C  ++dpy CgWC+ egrCtr+++C++++++ + +
   mKIAA0315    76    ECLSY--VTCAQCRDSQDPY-CGWCVIEGRCTRKSECSRAEETGHWL 119  

                   ssgpssqCp<-*
                    s  +++C    
   mKIAA0315   120 WS-REKSCV    127  

PSI: domain 2 of 3, from 222 to 275: score 18.7, E = 0.56
                   *->rCsqygv....tsCseCllardpygCgWCssegrCtrgerCderrgs
                      +C+ +++  ++  C +C ++r+   C+W+     C +++  +e+ + 
   mKIAA0315   222    DCREAMSlvenLPCISCASNRWT--CQWDLQYYECREASPNPEEGII 266  

                   rqnwssgpssqCp<-*
                   r+++++     Cp   
   mKIAA0315   267 RAHMED----NCP    275  

PSI: domain 3 of 3, from 367 to 410: score 41.3, E = 1.3e-07
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                      +Cs ++ ++Cs Cl+a++ y+C WC +++rC+ ++ C+       n+
   mKIAA0315   367    NCSFGR-SDCSLCLAADPAYRCVWCRGQNRCVYEALCS-------NV 405  

                   ssgpssqCp<-*
                   +s    +Cp   
   mKIAA0315   406 TS----ECP    410  

IPT: domain 1 of 2, from 448 to 534: score 68.3, E = 9.5e-16
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                       P  ++++P++Gp +GGt ++t+ G++Ld+ gs + vrv+++     
   mKIAA0315   448    TPQPLSVEPRQGPQAGGT-TLTINGTHLDT-GSKEDVRVTLN----D 488  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   vpC+++        +  ++ C+t+ +l     pg+v++    e++ +++ 
   mKIAA0315   489 VPCEVTK-------FGAQLQCVTGQQL----APGQVTL----EIYYGGSR 523  

                   vrtelsppspFtYv<-*
                   v++   p  +FtY    
   mKIAA0315   524 VPS---PGISFTYC    534  

IPT: domain 2 of 2, from 536 to 647: score 35.5, E = 7.4e-06
                   *->dPvItrisPssGplsGGteritlcGknLds.................
                      +P I +++P ++++sGG+  i ++G+ +   ++       ++ ++ +
   mKIAA0315   536    NPMIRAFEPLRSFVSGGR-SINVTGQGFSLiqkfamvviaeplrswr 581  

                   .....dgsvvfvrvgvgGrvWevpCtflpsdvhGkdsstaivCrtPpyln
                   +++++ g  ++v+v+      +++  f ++        t+ v+ +P+ ++
   mKIAA0315   582 rrrreAGALERVTVE------GMEYVFYND--------TKVVFLSPAVPE 617  

                   qspgpgsvpvrvtgevgfdnggvrtel.sppspFtYv<-*
                       p  +++    +v ++++g  + l+++   F+Yv   
   mKIAA0315   618 ---EPEAYNL----TVLIRMDGHCAPLrTEAGVFEYV    647  

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