hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03309/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0315  ( 1299 res)   mbg03309

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIG      IPT/TIG domain                                 105.8    8.1e-28   2
PSI      Plexin repeat                                   91.1    2.3e-23   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/2      76   127 ..     1    63 []    55.7    1e-12
PSI        2/2     367   410 ..     1    63 []    42.9  7.2e-09
TIG        1/2     449   534 ..     1   105 []    65.7  9.9e-16
TIG        2/2     537   647 ..     1   105 []    38.8  1.2e-07

Alignments of top-scoring domains:
PSI: domain 1 of 2, from 76 to 127: score 55.7, E = 1e-12
                   *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfyGeCpraep
                       C  y +C++C  ++dp yCgWC+ egrCtr+s       eC+rae 
   mKIAA0315    76    ECLSYVTCAQCRDSQDP-YCGWCVIEGRCTRKS-------ECSRAE- 113  

                   endqwldwsws.sskCp<-*
                      +  +w+ws+++ C+   
   mKIAA0315   114 ---ETGHWLWSrEKSCV    127  

PSI: domain 2 of 2, from 367 to 410: score 42.9, E = 7.2e-09
                   *->nCsqy.tsCssCLaardpfyCgWCssegrCtrgsaytsfyGeCprae
                      nCs  +++Cs CLaa++ ++C WC +++rC++++        C++ +
   mKIAA0315   367    NCSFGrSDCSLCLAADPAYRCVWCRGQNRCVYEA-------LCSNVT 406  

                   pendqwldwswssskCp<-*
                                s Cp   
   mKIAA0315   407 -------------SECP    410  

TIG: domain 1 of 2, from 449 to 534: score 65.7, E = 9.9e-16
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P   s++P++gp +GGt++Ti G++l++gs+          ed++Vt
   mKIAA0315   449    PQPLSVEPRQGPQAGGTTLTINGTHLDTGSK----------EDVRVT 485  

                   fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgrs
                   ++++p  C+v+   ++  ++C+t+ +  +g+    vt++++ gg   ++ 
   mKIAA0315   486 LNDVP--CEVTKFGAQ--LQCVTGQQLaPGQ----VTLEIYYGG--SRVP 525  

                   sspvtFtYv<-*
                   s + +FtY    
   mKIAA0315   526 SPGISFTYC    534  

TIG: domain 2 of 2, from 537 to 647: score 38.8, E = 1.2e-07
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P I +++P+++++sGG  i +tG+++  ++              +V+
   mKIAA0315   537    PMIRAFEPLRSFVSGGRSINVTGQGFSLIQ-----------KFAMVV 572  

                   fggtpv........pCdvisssss.........tqivCktPpva.ggpsp
                   +++   + +++++++  + +++ ++ +    ++t++v+ +P+v+++ ++ 
   mKIAA0315   573 IAEPLRswrrrrreAGALERVTVEgmeyvfyndTKVVFLSPAVPeEPEAY 622  

                   pvvtvsvdggg.sgdgrssspvtFtYv<-*
                   +  tv +  +g+  + ++++ + F+Yv   
   mKIAA0315   623 N-LTVLIRMDGhC-APLRTEAGVFEYV    647  

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