hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04168/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0314  ( 886 res)   mbg04168

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BROMO    bromo domain                                   150.9    1.3e-40   1
PHD      PHD zinc finger                                 53.6    2.6e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1     662   708 ..     1    39 []    53.6  2.6e-11
BROMO      1/1     772   880 ..     1   118 []   150.9  1.3e-40

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 662 to 708: score 53.6, E = 2.6e-11
                   *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprC
                      +C vC+k+++++ ll+Cd gCdr  H+ C++p++e +p+g+w+C  C
   mKIAA0314   662    TClVCRKgdndEfLLLCD-GCDRGCHIyCHRPKMEaVPEGdWFCAVC 707  

                   k<-*
                   +   
   mKIAA0314   708 L    708  

BROMO: domain 1 of 1, from 772 to 880: score 150.9, E = 1.3e-40
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      s+++     ++++ +l +++sh        + awpFlepv++++  v
   mKIAA0314   772    SMRsHHSDLTFCEIILMEMESH--------DAAWPFLEPVNPRL--V 808  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                    +Y  +Ik+PMD++t++++l  g Y+s eeF+aD  L+f+N++t+Ne ds
   mKIAA0314   809 SGYRRVIKNPMDFSTMRERLLRGGYTSSEEFAADALLVFDNCQTFNEDDS 858  

                   evykdAkkLeklfeeklkelpp<-*
                   ev k+++ ++++fe++++e+++   
   mKIAA0314   859 EVGKAGHVMRRFFESRWEEFYQ    880  

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