hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg04168/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0314 ( 886 res) mbg04168 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- BROMO bromo domain 150.9 1.3e-40 1 PHD PHD zinc finger 53.6 2.6e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PHD 1/1 662 708 .. 1 39 [] 53.6 2.6e-11 BROMO 1/1 772 880 .. 1 118 [] 150.9 1.3e-40 Alignments of top-scoring domains: PHD: domain 1 of 1, from 662 to 708: score 53.6, E = 2.6e-11 *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprC +C vC+k+++++ ll+Cd gCdr H+ C++p++e +p+g+w+C C mKIAA0314 662 TClVCRKgdndEfLLLCD-GCDRGCHIyCHRPKMEaVPEGdWFCAVC 707 k<-* + mKIAA0314 708 L 708 BROMO: domain 1 of 1, from 772 to 880: score 150.9, E = 1.3e-40 *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv s+++ ++++ +l +++sh + awpFlepv++++ v mKIAA0314 772 SMRsHHSDLTFCEIILMEMESH--------DAAWPFLEPVNPRL--V 808 PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds +Y +Ik+PMD++t++++l g Y+s eeF+aD L+f+N++t+Ne ds mKIAA0314 809 SGYRRVIKNPMDFSTMRERLLRGGYTSSEEFAADALLVFDNCQTFNEDDS 858 evykdAkkLeklfeeklkelpp<-* ev k+++ ++++fe++++e+++ mKIAA0314 859 EVGKAGHVMRRFFESRWEEFYQ 880 //