hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04168/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0314  ( 886 res)   mbg04168

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Bromodomain Bromodomain                                 119.5    6.2e-32   1
PHD         PHD-finger                                   66.7      5e-16   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PHD           1/1     662   710 ..     1    51 []    66.7    5e-16
Bromodomain   1/1     782   866 ..     1    92 []   119.5  6.2e-32

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 662 to 710: score 66.7, E = 5e-16
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
                       C vC+k+d+  +++ll+CDgCdr +H++C+ p++e++peg+W+C  
   mKIAA0314   662    TCLVCRKGDN--DEFLLLCDGCDRGCHIYCHRPKMEAVPEGDWFCAV 706  

                   Ctpk<-*
                   C      
   mKIAA0314   707 CLSQ    710  

Bromodomain: domain 1 of 1, from 782 to 866: score 119.5, E = 6.2e-32
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      +++++l ++e    h+  a+pfl+pV+p    + +Y+ +Ik+PMD++
   mKIAA0314   782    FCEIILMEMES---HD-AAWPFLEPVNPR--LVSGYRRVIKNPMDFS 822  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T++++l  g Y +s eeF aD  L+f+N++t+Ne+dsev k+++    
   mKIAA0314   823 TMRERLLRGGY-TSSEEFAADALLVFDNCQTFNEDDSEVGKAGHV    866  

//