hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbf/mbf01960/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0312 ( 2934 res) mbf01960 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- HECT HECT-domain (ubiquitin-transferase) 596.7 1.4e-175 1 WWE WWE domain 43.7 4.2e-09 1 DDHD DDHD domain -81.8 0.95 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WWE 1/1 165 236 .. 1 89 [] 43.7 4.2e-09 DDHD 1/1 1977 2168 .. 1 267 [] -81.8 0.95 HECT 1/1 2627 2934 .] 1 366 [] 596.7 1.4e-175 Alignments of top-scoring domains: WWE: domain 1 of 1, from 165 to 236: score 43.7, E = 4.2e-09 *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk ++++sn W+++ +d++g+W Ys +++ +I a++ ++ mKIAA0312 165 YLQSNSNN-------WRWF--DDRSGRWCSYSASNNSTIDSAWKSGE 202 kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-* + ++ + + +r+Yt+ f tm+Q++eetg +R+V mKIAA0312 203 T---SVR-F-TAGRRRYTVQFTTMVQVNEETG---NRRPVML 236 DDHD: domain 1 of 1, from 1977 to 2168: score -81.8, E = 0.95 *->LdFkvenfFaiGSPlGlfltiRgtkiGDRPEFPnldslDllvsrpaC ++ + + +SPlG + + + P++ + +s+++ mKIAA0312 1977 GETSPHSLE--ASPLGQLMNMLS--------HPVIRR----SSLLTE 2009 kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep k + + +s + + +p +k + +++++++ mKIAA0312 2010 K-------------------LLRLLS--LISIALPENKVSEVQTNSSNSG 2038 ltrviadlpqnflsnlqssikstnvltaasgasrkneeeteevkestars ++ + ++ + +++++t++++aa+++ + + + + +++st mKIAA0312 2039 SSTAATSNTSTTTTTTTTATAPTPTPPAATTPVTSAPALVAATAIST--- 2085 GCSPRmTpapeqtenltemliareeravesqpssfsrdSiedekktvaen +t+++++ ++ + + mKIAA0312 2086 -----------ITVAASTTVTT-----------------------PTTAT 2101 ietakeaskeehlaekvlmskLngtkRIDYvLqePaallafnsYls...a ++ + k ++ kv +g++ ID+ + + ++l++n ++ ++ mKIAA0312 2102 TTVSTSTTKGSKSPAKV----GEGGSGIDFKMVS--SGLTENQLQLsveV 2145 lksHasYWeSeDv..AlFlLkeiyr<-* l+sH++ ++e +++A+ +L ++ r mKIAA0312 2146 LTSHSC--SEEGLedAANVLLQLSR 2168 HECT: domain 1 of 1, from 2627 to 2934: score 596.7, E = 1.4e-175 *->tLlsrelfnPdygLFeysdnseakseeddsysgyvedsytlfpnPls + +sre+fnP+y+LF++s d+ t+ +nP+s mKIAA0312 2627 MIISREMFNPMYALFRTS----------------PGDRVTYTINPSS 2657 gesnpehervlkyFkflGrilGlAlydgrllDlpFsraFyKklLmagkps +np+h l+yFkf+Gri+++A+yd+rll+++F+r+FyK++L gk+ mKIAA0312 2658 H-CNPNH---LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHIL--GKS- 2700 igivtleDlesvDPelynSLkwllendgdKkIedsLLgsledveedLe.. v + D+es D ++y++L++llend++ +L+ + mKIAA0312 2701 ---VRYTDMESEDYHFYQGLVYLLENDVS----------------TLGyd 2731 LtFsveeessvgfeadarffGgtktveELkPnGrnipVTneNkeeYvely LtFs+e+++ f G++++++ LkPnG+ni VT+eNk+eYv+l+ mKIAA0312 2732 LTFSTEVQE---F-------GVCEVRD-LKPNGANILVTEENKKEYVHLV 2770 vdyrLnkgiekQfeAFrkGFsevipsrlLslFdpeELelLicGspeeiDv +++r++ i+kQ+ AF++GF+e+ip+rl+s+F+++ELelLi+G+p +iD+ mKIAA0312 2771 CQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLP-TIDI 2819 ddLkenTeYdggYtedsplktiqwFWevleeftneeraklLqFvTGssRl ddLk+nTeY+ Y ++s+ +iqwFW++l++f++ +rak+LqFvTG+s++ mKIAA0312 2820 DDLKSNTEYH-KYQSNSI--QIQWFWRALRSFDQADRAKFLQFVTGTSKV 2866 PvgGFkaLqgGsnGpPkFtIvrkegggdddrLPtAhTCFNrLkLPpYsSk P++GF+aL+ G+nG++kF+I+r + ++drLP+AhTCFN+L+LP Y+S mKIAA0312 2867 PLQGFAALE-GMNGIQKFQIHRD--DRSTDRLPSAHTCFNQLDLPAYESF 2913 eiLrekLllAInEgseGFgle<-* e+Lr++LllAI+E+seGFgl+ mKIAA0312 2914 EKLRHMLLLAIQECSEGFGLA 2934 //