hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mia/mia33045/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0308  ( 1890 res)   mia33045

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HELICc   helicase superfamily c-terminal domain          88.9    6.2e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HELICc     1/1     232   316 ..     1    86 []    88.9  6.2e-22

Alignments of top-scoring domains:
HELICc: domain 1 of 1, from 232 to 316: score 88.9, E = 6.2e-22
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki...kv
                      d+l+++L ++     + + r++G+   + R++++++F k ++++ ++
   mKIAA0308   232    DILEDYLIHK----RYLYERIDGRVRGNLRQAAIDRFSKPDSdrfVF 274  

                   LvaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   L++T+++++G++++++d+ I++d +w+p++++Q+  R++R+G   
   mKIAA0308   275 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG    316  

//