hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mia/mia33045/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0308  ( 1890 res)   mia33045

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
TCH        Associated with TFs and helicases            170.9    2.2e-47   2
Helicase_C Helicase conserved C-terminal domain          87.5    2.6e-22   1
SNF2_N     SNF2 family N-terminal domain                 29.4    2.4e-09   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SNF2_N       1/1       1   170 [.     1   356 []    29.4  2.4e-09
Helicase_C   1/1     237   316 ..     1    76 []    87.5  2.6e-22
TCH          1/2    1477  1526 ..     1    50 []    98.1  1.8e-25
TCH          2/2    1551  1595 ..     1    50 []    73.1  5.9e-18

Alignments of top-scoring domains:
SNF2_N: domain 1 of 1, from 1 to 170: score 29.4, E = 2.4e-09
                   *->YQleGvnWLislyknlvkkendslglggILADEMGLGKTlQtIslla
                                    +                                
   mKIAA0308     1    --------------G-------------------------------- 1    

                   ylkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgn
                                                                     
   mKIAA0308     - -------------------------------------------------- -    

                   srdqirkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklei
                                    g               +         eL+   i
   mKIAA0308     2 -----------------G---------------CG--------ELNA--I 9    

                   nwryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkE
                   +wr vi+DE+ Hr+KN ++kl  ++ lk  +   +++lLTGTPlQN ++E
   mKIAA0308    10 DWRCVIIDEA-HRLKNKNCKL--LEGLKLMN-LEHKVLLTGTPLQNTVEE 55   

                   lwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadkteaL
                   l+sLl+Fl P +F s        ++F+++f +  +e+             
   mKIAA0308    56 LFSLLHFLEPLRFPSE-------STFMQEFGDLKTEE------------- 85   

                   rreknveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcel
                              +++ L+ ilkp +LRRlK+dvek L p  K e+++++el
   mKIAA0308    86 -----------QVQKLQAILKPMMLRRLKEDVEKKLAP--KEETIIEVEL 122  

                   sklQkelYkkflkgeskdvkaindserreggkeknegksrllnlimqLrK
                   + +Qk++Y+ +l   +k++ ++ ++     g     +  +l n +m+LrK
   mKIAA0308   123 TNIQKKYYRAIL---EKNFSFLSKG----AGQT---NVPNLVNTMMELRK 162  

                   icNfHPyLf<-*
                   +cN HPyL+   
   mKIAA0308   163 CCN-HPYLI    170  

Helicase_C: domain 1 of 1, from 237 to 316: score 87.5, E = 2.6e-22
                   *->ll.epgikvarlhGglsqeeReeilekFrsgks...kvLvaTdvaar
                      +l  + + + r++G+   + R++++++F + +s++ ++L++T+++++
   mKIAA0308   237    YLiHKRYLYERIDGRVRGNLRQAAIDRFSKPDSdrfVFLLCTRAGGL 283  

                   GlDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   G++++++++ I++d +wnp++++Q+  R++R+G   
   mKIAA0308   284 GINLTAADTCIIFDSDWNPQNDLQAQARCHRIG    316  

TCH: domain 1 of 2, from 1477 to 1526: score 98.1, E = 1.8e-25
                   *->dgeeRVpVinkktGkkLtGddAPkakdLerWLeenPgyvvDlgevaP
                      d+e +VpVin+k+G++L+GddAPk+kdL+rWL+e+Pgyv+Dlg+++P
   mKIAA0308  1477    DTESPVPVINLKDGTRLAGDDAPKRKDLDRWLKEHPGYVEDLGAFIP 1523 

                   rst<-*
                   r +   
   mKIAA0308  1524 RVQ    1526 

TCH: domain 2 of 2, from 1551 to 1595: score 73.1, E = 5.9e-18
                   *->dgeeRVpVinkktGkkLtGddAPkakdLerWLeenPgyvvDlgevaP
                      +geeRV+ in+++ +k++G++AP++kdL+r+L+en +y      vaP
   mKIAA0308  1551    TGEERVQLINRRNARKVGGAFAPPLKDLCRFLKENSEY-----GVAP 1592 

                   rst<-*
                   +++   
   mKIAA0308  1593 EWG    1595 

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