hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05988/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0307  ( 725 res)   mbg05988

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
sensory_box sensory_box: PAS domain S-box                21.0      0.029   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
sensory_box   1/1     334   461 ..     1   130 []    21.0    0.029

Alignments of top-scoring domains:
sensory_box: domain 1 of 1, from 334 to 461: score 21.0, E = 0.029
                   *->reseeryraifesspdaiivvdleGnilyvnpafeelfGysaeellG
                           +  + +    + +  ++++G+i++v p+   + Gy +++llG
   mKIAA0307   334    SSPVCMDMSGMSVPTEFLSRHNSDGIITFVDPRCISVIGYQPQDLLG 380  

                   rnvlelipeedreelrerierlletgerepvseerrvlgrrkdGseiwve
                   + +le+ ++ed  +lre ++++ +  ++++ s  +r+  r+k+ +++ ++
   mKIAA0307   381 KDILEFCHPEDQSHLRESFQQVVK-LKGQVLSVMYRF--RTKNREWLLIR 427  

                   vsvspird.snggvlgvlgivrDiterkeaeeal<-*
                    s     ++ + ++ +v+++  ++ ++++ + +l   
   mKIAA0307   428 TSSFTFQNpYSDEIEYVICTNTNVKQLQQQQAEL    461  

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