hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05988/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0307  ( 725 res)   mbg05988

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PAS      PAS fold                                        72.4    9.2e-18   2
HLH      Helix-loop-helix DNA-binding domain             63.9    3.5e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HLH        1/1      77   130 ..     1    53 []    63.9  3.5e-15
PAS        1/2     150   257 ..     1   123 []    67.7  2.4e-16
PAS        2/2     338   451 ..     1   123 []     4.7     0.92

Alignments of top-scoring domains:
HLH: domain 1 of 1, from 77 to 130: score 63.9, E = 3.5e-15
                   *->rRrahnarERrRRdriNdafeeLrellPtla..pskKlsKaeiLrlA
                       R++h+++ERrRR+++ + + eL +++Pt ++   +K +K++iLr+A
   mKIAA0307    77    SRENHSEIERRRRNKMTQYITELSDMVPT-CsaLARKPDKLTILRMA 122  

                   veYIksLq<-*
                   v+++ks++   
   mKIAA0307   123 VSHMKSMR    130  

PAS: domain 1 of 2, from 150 to 257: score 67.7, E = 2.4e-16
                   *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks
                      e+ + ile+ ++ + fvv  e Gr+ yv+++ +  l+++++e+ G +
   mKIAA0307   150    ELKHLILEA-ADGFLFVVAAETGRVIYVSDSVTPVLNQPQSEWFGST 195  

                   lldlipeeddaeclvaelllqaleqgee.rgvevsfrvsgqrflvrdgrp
                   l+++++++      ++e+l+++l + e++ ++++   +         g++
   mKIAA0307   196 LYEQVHPD------DVEKLREQLCTSENsMTGRILDLK--------TGTV 231  

                   ihvevraspvrdaggeilgflgvlrDi<-*
                   +   ++ s+++++g+++  f++++r+    
   mKIAA0307   232 KKEGQQSSMRMCMGSRR-SFICRMRCG    257  

PAS: domain 2 of 2, from 338 to 451: score 4.7, E = 0.92
                   *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks
                       +  + +    +++    +  dG+i++v +  ++  G+++++++Gk 
   mKIAA0307   338    CMDMSGMSV-PTEFLSRHN-SDGIITFVDPRCISVIGYQPQDLLGKD 382  

                   lldlipeeddaeclvaelllqaleqgee.rgvevsfrvsgqrflvrdgrp
                   +l++ ++ed++   ++e ++q+ + +++  +v  +fr+        ++r+
   mKIAA0307   383 ILEFCHPEDQSH--LRESFQQVVKLKGQvLSVMYRFRT--------KNRE 422  

                   ihvevraspvrd...aggeilgflgvlrDi<-*
                    ++++r+s ++++++ ++ei +++++   +   
   mKIAA0307   423 -WLLIRTSSFTFqnpYSDEIEYVICTNTNV    451  

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