hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06324/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0304  ( 1744 res)   mbg06324

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET (Su(var)3-9, Enhancer-of-zeste, Trithora   156.4    2.9e-42   1
FYRC     "FY-rich" domain, C-terminal region            134.6    1.1e-35   1
PHD      PHD zinc finger                                114.7      1e-29   4
FYRN     "FY-rich" domain, N-terminal region             78.7    7.3e-19   1
PostSET  Cysteine-rich motif following a subset of SE    28.0     0.0013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/4     258   305 ..     1    39 []    33.9  2.2e-05
PHD        2/4     306   356 ..     1    39 []    48.4  9.3e-10
PHD        3/4     392   449 ..     1    39 []    37.2  2.2e-06
PHD        4/4     695   741 ..     1    39 []    19.0     0.66
FYRN       1/1     794   837 ..     1    46 []    78.7  7.3e-19
FYRC       1/1    1442  1527 ..     1    97 []   134.6  1.1e-35
SET        1/1    1604  1726 ..     1   114 []   156.4  2.9e-42
PostSET    1/1    1728  1744 .]     1    17 []    28.0   0.0013

Alignments of top-scoring domains:
PHD: domain 1 of 4, from 258 to 305: score 33.9, E = 2.2e-05
                   *->yC.vCgk...g.llqCdkgCdrwyHv.Clgpple...epdg.wyCpr
                      +C +C +++ ++l++C   C++ +H+ Cl  ++++++ ++++w+C r
   mKIAA0304   258    VClLCASkglHeLVFCQ-VCCDPFHPfCLEEAERpspQHRDtWCCRR 303  

                   Ck<-*
                   Ck   
   mKIAA0304   304 CK    305  

PHD: domain 2 of 4, from 306 to 356: score 48.4, E = 9.3e-10
                   *->yC.vCgk.....g.llqCdkgCdrwyHv.Clgpple....epdg.wy
                      +C+vCg++++++ +ll C+ +C+++yH+ Clgp+ +++ +  + +w+
   mKIAA0304   306    FChVCGRkgrgsKhLLECE-RCRHAYHPaCLGPSYPtratRRRRhWI 351  

                   CprCk<-*
                   C+ C+   
   mKIAA0304   352 CSACV    356  

PHD: domain 3 of 4, from 392 to 449: score 37.2, E = 2.2e-06
                   *->yC.vCgk........g.llqCdkgCdrwyHv.Clgpple........
                      yC++C +  ++++ +++++qC  +Cd+w+H +C g+++e+ +  ++ 
   mKIAA0304   392    YCpICTRcyedndyeSkMMQCA-QCDHWVHAkCEGLSDEdyeilsgl 437  

                   epdg.wyCprCk<-*
                   + +  + C  C    
   mKIAA0304   438 PDSVlYTCGPCA    449  

PHD: domain 4 of 4, from 695 to 741: score 19.0, E = 0.66
                   *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgpple..epdg.wyCprCk
                      +C++C k+g +++C   +C   +H+ C++ + +    d++ +C +++
   mKIAA0304   695    RCeLCLKpGaTVGCClSSCLSNFHFmCARASYCifQDDKkVFCQKHT 741  

                   <-*
                      
   mKIAA0304     -     -    

FYRN: domain 1 of 1, from 794 to 837: score 78.7, E = 7.3e-19
                   *->llpiqsklfhsesaIfPvGYkatRkYwSvkdPnrrclYtiscvIde<
                       l+++s+l+++e ++fP+GY+++R+YwS+ d++rrc+Y  +c+I e 
   mKIAA0304   794    SLGTLSDLSDCEGRLFPIGYQCSRLYWSTVDARRRCWY--RCRILE  837  

                   -*
                     
   mKIAA0304     -    -    

FYRC: domain 1 of 1, from 1442 to 1527: score 134.6, E = 1.1e-35
                   *->lFrvevesdpledeqFkgeSpekcWemvlerVqearkaadlqgLkss
                      ++r+e++sd+  ++++++eS e +W++++e+Vqear +a+l      
   mKIAA0304  1442    HLRFEISSDD--GFSVEAESLEVAWRTLIEKVQEARGHARL------ 1480 

                   lqllpegvsidGeeMFGlsspavvkliEsLpgveqctnYwfrkygrspll
                   ++l+++g+s  G +++G++++av++l+E+Lpg+++c++Y+fr y+++ + 
   mKIAA0304  1481 RHLSFSGMS--GARLLGIHHDAVIFLAEQLPGAQRCQHYKFR-YHQQGEG 1527 

                   <-*
                      
   mKIAA0304     -     -    

SET: domain 1 of 1, from 1604 to 1726: score 156.4, E = 2.9e-42
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii............
                      + + v++s ++G+Gl+++++I +Ge+++ey+G +i++  ++++++  
   mKIAA0304  1604    EAVGVYRSAIHGRGLFCKRNIDAGEMVIEYSGIVIrsvltdkrekfy 1650 

                   ......fylfd.....ciDatranggkGniarfiNHSCePNcelifvevd
                   ++++ ++y+f+ ++ +++Dat+    +Gn arfiNHSCePNc  +++ v+
   mKIAA0304  1651 dgkgigCYMFRmddfdVVDATM----HGNAARFINHSCEPNCFSRVIHVE 1696 

                   gfdprgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                   g           ++ivifAlr+I  GEELt+dY++  e++   
   mKIAA0304  1697 G----------QKHIVIFALRRILRGEELTYDYKFPIEDA    1726 

PostSET: domain 1 of 1, from 1728 to 1744: score 28.0, E = 0.0013
                   *->kkqpClCGaanCrGfLg<-*
                      +k+pC+CGa++Cr+fL+   
   mKIAA0304  1728    NKLPCNCGAKRCRRFLN    1744 

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