hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06324/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0304  ( 1744 res)   mbg06324

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET domain                                     174.4    1.9e-48   1
FYRC     F/Y rich C-terminus                            128.7    1.1e-34   1
PHD      PHD-finger                                     101.5    1.6e-26   3
zf-CXXC  CXXC zinc finger                                85.3    1.2e-21   1
FYRN     F/Y-rich N-terminus                             76.4      6e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-CXXC    1/1      13    59 ..     1    49 []    85.3  1.2e-21
PHD        1/3     258   307 ..     1    51 []    40.2  4.8e-08
PHD        2/3     308   358 ..     1    51 []    32.2  1.2e-05
PHD        3/3     392   451 ..     1    51 []    44.9  1.8e-09
FYRN       1/1     787   837 ..     1    55 []    76.4    6e-19
FYRC       1/1    1440  1523 ..     1    96 []   128.7  1.1e-34
SET        1/1    1598  1726 ..     1   261 []   174.4  1.9e-48

Alignments of top-scoring domains:
zf-CXXC: domain 1 of 1, from 13 to 59: score 85.3, E = 1.2e-21
                   *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR
                      +++r++r CG+C+gC+r +DCG C +CldkpkFGGp++kkQ +C++R
   mKIAA0304    13    KKMRMAR-CGHCRGCLRVQDCGSCVNCLDKPKFGGPNTKKQ-CCVYR 57   

                   RC<-*
                   +C   
   mKIAA0304    58 KC    59   

PHD: domain 1 of 3, from 258 to 307: score 40.2, E = 4.8e-08
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgpple..eppegkWlC
                       C +C +++     +l++C  C+++fH++Cl   +++++ ++++W+C
   mKIAA0304   258    VCLLCASKG---LHELVFCQVCCDPFHPFCLEEAERpsPQHRDTWCC 301  

                   peCtpk<-*
                   ++C+++   
   mKIAA0304   302 RRCKFC    307  

PHD: domain 2 of 3, from 308 to 358: score 32.2, E = 1.2e-05
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgpple...eppegkWl
                         vCg+++    + ll C+ C +++H+aClgp+ +++    + +W+
   mKIAA0304   308    --HVCGRKGRG-SKHLLECERCRHAYHPACLGPSYPtraTRRRRHWI 351  

                   CpeCtpk<-*
                   C  C+++   
   mKIAA0304   352 CSACVRC    358  

PHD: domain 3 of 3, from 392 to 451: score 44.9, E = 1.8e-09
                   *->yCsvCgkpddd..aggdllqCDgCdrwfHlaClgpple.......ep
                      yC++C ++++d++++ +++qC +Cd+w+H++C g+++e+ +  ++ p
   mKIAA0304   392    YCPICTRCYEDndYESKMMQCAQCDHWVHAKCEGLSDEdyeilsgLP 438  

                   pegkWlCpeCtpk<-*
                    ++ ++C  C  +   
   mKIAA0304   439 DSVLYTCGPCAGA    451  

FYRN: domain 1 of 1, from 787 to 837: score 76.4, E = 6e-19
                   *->igaltvvkLGvIvpdnsksfhnenaIyPiGYksrrkylSvldptnlt
                      ig++ + +LG +    s+++++e  ++PiGY+++r+y+S+ d+++++
   mKIAA0304   787    IGSIRINSLGTL----SDLSDCEGRLFPIGYQCSRLYWSTVDARRRC 829  

                   lYtcevLd<-*
                   +Y+c++L+   
   mKIAA0304   830 WYRCRILE    837  

FYRC: domain 1 of 1, from 1440 to 1523: score 128.7, E = 1.1e-34
                   *->slaPlFvicsedqgdpgevfkgvSasacWekilerVqearkkacasl
                      ++++ F+i+s+d    g++++++S + +W++++e+Vqear +a  +l
   mKIAA0304  1440    GPHLRFEISSDD----GFSVEAESLEVAWRTLIEKVQEARGHA--RL 1480 

                   lplklgfpesisGedmFGLsapaVqkliEsLPGaesCtnYrtlkfryss<
                   ++l   +++++sG++++G++++aV++l+E+LPGa++C++Y   kfry++ 
   mKIAA0304  1481 RHL---SFSGMSGARLLGIHHDAVIFLAEQLPGAQRCQHY---KFRYHQ  1523 

                   -*
                     
   mKIAA0304     -    -    

SET: domain 1 of 1, from 1598 to 1726: score 174.4, E = 1.9e-48
                   *->vqkgrwarlegfktegkGwGlratedIpkGefiiEYpGelitseeae
                        k  + ++ ++++ ++G+Gl+++++I +Ge++iEY G +i+s   +
   mKIAA0304  1598    LKKTSKEAVGVYRSAIHGRGLFCKRNIDAGEMVIEYSGIVIRSVLTD 1644 

                   kreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPtys
                   kre      k+yd +g++ +  Y+f+ d+                     
   mKIAA0304  1645 KRE------KFYDGKGIG-C--YMFRMDD--------------------- 1664 

                   PlfWseeeleLkGTqllevdkeeleeydllaeeievflqhklFpdveeef
                                                                     
   mKIAA0304     - -------------------------------------------------- -    

                   sfedflWaasivsSRafslvegvnreeensegslelviDAtrkGNiaRFi
                                                      +v+DAt++GN aRFi
   mKIAA0304  1665 ----------------------------------FDVVDATMHGNAARFI 1680 

                   NHSCePNcevqvvfvdgedlgdsdvtDeaglepgdprivlfAlrdIpaGe
                   NHSCePNc+ +v+ v+                 g ++iv+fAlr I  Ge
   mKIAA0304  1681 NHSCEPNCFSRVIHVE-----------------GQKHIVIFALRRILRGE 1713 

                   ELtydYgydksnge<-*
                   ELtydY+ ++ ++    
   mKIAA0304  1714 ELTYDYK-FPIEDA    1726 

//