hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg05848/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0302 ( 1972 res) mbg05848 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SPEC Spectrin repeats 1290.6 0 16 PH Pleckstrin homology domain. 63.9 2e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SPEC 1/16 12 112 .. 1 104 [] 92.4 5.4e-23 SPEC 2/16 118 222 .. 1 104 [] 98.5 7.7e-25 SPEC 3/16 228 328 .. 1 104 [] 100.3 2.2e-25 SPEC 4/16 334 433 .. 1 104 [] 90.5 2e-22 SPEC 5/16 439 539 .. 1 104 [] 76.7 2.8e-18 SPEC 6/16 545 646 .. 1 104 [] 96.8 2.5e-24 SPEC 7/16 652 753 .. 1 104 [] 82.0 7.2e-20 SPEC 8/16 759 859 .. 1 104 [] 88.3 9.5e-22 SPEC 9/16 865 964 .. 1 104 [] 82.9 3.9e-20 SPEC 10/16 970 1069 .. 1 104 [] 96.3 3.7e-24 SPEC 11/16 1075 1169 .. 1 104 [] 89.9 3e-22 SPEC 12/16 1175 1275 .. 1 104 [] 94.9 9.6e-24 SPEC 13/16 1281 1382 .. 1 104 [] 86.3 3.6e-21 SPEC 14/16 1388 1488 .. 1 104 [] 81.6 9.6e-20 SPEC 15/16 1494 1594 .. 1 104 [] 89.7 3.5e-22 SPEC 16/16 1600 1840 .. 1 104 [] 36.0 5e-06 PH 1/1 1803 1914 .. 1 82 [] 63.9 2e-14 Alignments of top-scoring domains: SPEC: domain 1 of 16, from 12 to 112: score 92.4, E = 5.4e-23 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +F r+a+ e Wl+e ++l+s++++g l++vea +kH+a+e+ mKIAA0302 12 ARFDRKAAMRETWLSENQRLVSQDNFG--LELAAVEAAVRKHEAIET 56 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae ++ a+ rv+a+++ + +L +e + +d + I +r++++ + W+ L+++++ mKIAA0302 57 DIVAYSGRVQAVDAVAAELAAE-HYHDIKRIAARQNNVARLWDFLRQMVA 105 eRrqkLe<-* +Rr++L mKIAA0302 106 ARRERLL 112 SPEC: domain 2 of 16, from 118 to 222: score 98.5, E = 7.7e-25 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q+ ++d+ l++W+ e++ l+s+dlg k+l++ve+ll+ H+ ea mKIAA0302 118 QKVFQDLLYLMDWMAEMKGRLQSQDLG--KHLAGVEDLLQLHELVEA 162 elaaheervdalnelgeqLiee...sghpdaeeIeerleeLnerWeeLle ++a ++erv a+ + + ++++ ++++ + d + + er++ L++ +e+L+e mKIAA0302 163 DIAVQAERVRAVSASALRFCDPgkeYRPCDPQLVSERVATLEQSYEALCE 212 laeeRrqkLe<-* la+ Rr++Le mKIAA0302 213 LAATRRARLE 222 SPEC: domain 3 of 16, from 228 to 328: score 100.3, E = 2.2e-25 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++Fl+++ e+eaW++e++ ll+s d+g +Dl++v +ll kH al+ mKIAA0302 228 WRFLWEVGEAEAWVREQQHLLASADTG--RDLTGVLRLLNKHAALRG 272 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae e++ + ++ e+g+qL++e ghp a + r +eL+++We+L++lae mKIAA0302 273 EMSGRLGPLKLTLEQGQQLVAE-GHPGANQASTRAAELQAQWERLEALAE 321 eRrqkLe<-* eR q+L mKIAA0302 322 ERAQQLA 328 SPEC: domain 4 of 16, from 334 to 433: score 90.5, E = 2e-22 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +qF++da+++eaWl ++ +l+ss ++g +D+ s +al ++H ale+ mKIAA0302 334 YQFQADANDMEAWLVDALRLVSSPEVG--HDEFSTQALARQHRALEE 378 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae e+ ah++++dal e++ +L + + +e++ r+ L++++eeL+ +a mKIAA0302 379 EIRAHRPTLDALREQAAALPPA--LSHTPEVQGRVPTLEQHYEELQTRAG 426 eRrqkLe<-* eR ++Le mKIAA0302 427 ERARALE 433 SPEC: domain 5 of 16, from 439 to 539: score 76.7, E = 2.8e-18 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea + l++a W+eekeq+l+ l+ le++e+ ++++++le mKIAA0302 439 YTMLSEAGACGLWVEEKEQWLNGLALP--ERLEDLEVVQQRFETLEP 483 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae e++a ++rv a+n+ +eqL+++ ++p ++ I +e+Ln+rW++ + la+ mKIAA0302 484 EMNALAARVTAVNDIAEQLLKA-SPPGKDRIIGTQEQLNQRWQQFRSLAD 532 eRrqkLe<-* ++++L mKIAA0302 533 GKKAALT 539 SPEC: domain 6 of 16, from 545 to 646: score 96.8, E = 2.5e-24 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale q ++ ++ e+ aW++ek +++ s++ lg +Dl++v al++k+ e mKIAA0302 545 QNYHLECTETQAWMREKTkVIESTQGLG--NDLAGVLALQRKLAGTE 589 aelaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlela ++l+a +rv +l++++++L + ++++a++I rl e+++ We+L++ + mKIAA0302 590 RDLEAISARVGELTQEANALAAG-HPAQAPAINTRLGEVQAGWEDLRATM 638 eeRrqkLe<-* ++R++ L mKIAA0302 639 RRREESLG 646 SPEC: domain 7 of 16, from 652 to 753: score 82.0, E = 7.2e-20 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q Flr +d++ aWl+ ++++++se+ + +l+++eall +H al+ mKIAA0302 652 QDFLRSLDDFQAWLGRTQTAVASEEGP--ATLPEAEALLAQHAALRG 696 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae e++ + +++ l lge+ +++ +p+ +++rle+L + WeeL +++e mKIAA0302 697 EVERAQSEYSRLRTLGEEVTRDQADPQCLFLRQRLEALGTGWEELGRMWE 746 eRrqkLe<-* R+ +L mKIAA0302 747 SRQGRLA 753 SPEC: domain 8 of 16, from 759 to 859: score 88.3, E = 9.5e-22 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q Flrda+++e l+++e +ls+++++ ++l+++ a +kk+++++ mKIAA0302 759 QGFLRDARQAEGVLSSQEYVLSHTEMP--GTLQAADAAIKKLEDFMS 803 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae ++a++er+ l e+g+qL+++ g+ +ae+I+e+ + +++r ++ +e+++ mKIAA0302 804 TMDANGERIRGLLEAGRQLVSK-GNIHAEKIQEKADSIEKRHRKNQEAVQ 852 eRrqkLe<-* + +L mKIAA0302 853 QLLGRLR 859 SPEC: domain 9 of 16, from 865 to 964: score 82.9, E = 3.9e-20 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q+Fl+d++el+ W++ek+ +++ + + ++ +++kHqa++a mKIAA0302 865 QHFLQDCQELKLWIDEKMLTAQDVSY---DEARNLHTKWQKHQAFMA 908 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae elaa+++ +d+++++g++L e +++ + + e+le+L++rW+eL+ ++ mKIAA0302 909 ELAANKDWLDKVDKEGRELTLE-KPELKVVVSEKLEDLHRRWDELETTTQ 957 eRrqkLe<-* ++ + L mKIAA0302 958 AKARSLF 964 SPEC: domain 10 of 16, from 970 to 1069: score 96.3, E = 3.7e-24 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea + F + + le+Wle+ +++l s+d+g kDl+sv+ llkk+q le+ mKIAA0302 970 ELFAQSCSALESWLESLQAQLHSDDYG--KDLTSVNILLKKQQMLER 1014 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae e+a +e +v+a+++++++L +e + a e+e+ ++++e++++L++ ++ mKIAA0302 1015 EMAVREKEVEAIQAQAQALAQE--DQSAGEVERTSRAVEEKFRALCQPMK 1062 eRrqkLe<-* eR ++L mKIAA0302 1063 ERCRRLH 1069 [output cut off at A = 10 top alignments] //