hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg05848/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0302 ( 1972 res) mbg05848 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Spectrin Spectrin repeat 1135.9 0 16 PH PH domain 59.6 6.8e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Spectrin 1/16 9 113 .. 1 108 [] 95.9 8.2e-25 Spectrin 2/16 115 223 .. 1 108 [] 91.9 1.3e-23 Spectrin 3/16 225 329 .. 1 108 [] 73.2 5.3e-18 Spectrin 4/16 331 434 .. 1 108 [] 86.6 5.1e-22 Spectrin 5/16 436 540 .. 1 108 [] 84.2 2.6e-21 Spectrin 6/16 542 647 .. 1 108 [] 95.7 9e-25 Spectrin 7/16 649 754 .. 1 108 [] 74.9 1.7e-18 Spectrin 8/16 756 860 .. 1 108 [] 63.6 4.3e-15 Spectrin 9/16 862 965 .. 1 108 [] 85.6 9.8e-22 Spectrin 10/16 967 1070 .. 1 108 [] 90.7 2.9e-23 Spectrin 11/16 1072 1170 .. 1 108 [] 70.7 3e-17 Spectrin 12/16 1172 1276 .. 1 108 [] 92.9 6.4e-24 Spectrin 13/16 1278 1383 .. 1 108 [] 91.4 1.8e-23 Spectrin 14/16 1385 1489 .. 1 108 [] 74.9 1.7e-18 Spectrin 15/16 1491 1595 .. 1 108 [] 68.0 2e-16 Spectrin 16/16 1597 1684 .. 1 108 [] 12.9 0.064 PH 1/1 1803 1912 .. 1 92 [] 59.6 6.8e-14 Alignments of top-scoring domains: Spectrin: domain 1 of 16, from 9 to 113: score 95.9, E = 8.2e-25 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe +l +F r+a+ e W+se ++l+s++++g +l++v+a ++kHea+e mKIAA0302 9 QLAARFDRKAAMRETWLSENQRLVSQDNFGLELAAVEAAVRKHEAIE 55 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +++ a+ +rv+++++ a +L +e+ ++d ++i +r++ + ++W+ L++ mKIAA0302 56 TDIVAYS-GRVQAVDAVAAELAAEH--YHDIKRIAARQNNVARLWDFLRQ 102 laaeRkqkLee<-* ++a+R+++L+ mKIAA0302 103 MVAARRERLLL 113 Spectrin: domain 2 of 16, from 115 to 223: score 91.9, E = 1.3e-23 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe l+lq+ ++d+ l+ W+ e++ l+s+d+gk+l++v++Ll+ He e mKIAA0302 115 LELQKVFQDLLYLMDWMAEMKGRLQSQDLGKHLAGVEDLLQLHELVE 161 aelaahqqdrvdqlnelaqkLieeged..hpdseeikerleeLnerWeaL a++a++ +rv+++ + a ++ + g + +++d + er++ L++ +eaL mKIAA0302 162 ADIAVQA-ERVRAVSASALRFCDPGKEyrPCDPQLVSERVATLEQSYEAL 210 lelaaeRkqkLee<-* +elaa+R+++Lee mKIAA0302 211 CELAATRRARLEE 223 Spectrin: domain 3 of 16, from 225 to 329: score 73.2, E = 5.3e-18 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe +l++F +++ e+e+W +e++ ll+s d g+Dl++v +Ll kH a++ mKIAA0302 225 RRLWRFLWEVGEAEAWVREQQHLLASADTGRDLTGVLRLLNKHAALR 271 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle e+ ++ + ++ e++q+L++eg hp + + +r +eL ++We+L++ mKIAA0302 272 GEMSGRL-GPLKLTLEQGQQLVAEG--HPGANQASTRAAELQAQWERLEA 318 laaeRkqkLee<-* la+eR q+L + mKIAA0302 319 LAEERAQQLAQ 329 Spectrin: domain 4 of 16, from 331 to 434: score 86.6, E = 5.1e-22 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe l+qFq da+++e+W+ ++ +l+ss + g+D+ s+qaL ++H+a+e mKIAA0302 331 ASLYQFQADANDMEAWLVDALRLVSSPEVGHDEFSTQALARQHRALE 377 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +e+ ah+ + +d+l e+a +L + ++e++ r+ L++++e+L++ mKIAA0302 378 EEIRAHR-PTLDALREQAAALPPAL---SHTPEVQGRVPTLEQHYEELQT 423 laaeRkqkLee<-* +a eR ++Le+ mKIAA0302 424 RAGERARALEA 434 Spectrin: domain 5 of 16, from 436 to 540: score 84.2, E = 2.6e-21 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe l ++ + +a + +W +eke++l+ +++ le+++ ++++e++e mKIAA0302 436 LAFYTMLSEAGACGLWVEEKEQWLNGLALPERLEDLEVVQQRFETLE 482 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle e++a+ +rv ++n++a++L+ ++ +p +++i ++e+Ln+rW++ + mKIAA0302 483 PEMNALA-ARVTAVNDIAEQLLKAS--PPGKDRIIGTQEQLNQRWQQFRS 529 laaeRkqkLee<-* la+ +k++L mKIAA0302 530 LADGKKAALTS 540 Spectrin: domain 6 of 16, from 542 to 647: score 95.7, E = 9e-25 *->lllqqFqrdadelesWisekeallssedygk.DlesvqaLlkkHeaf l +q ++ ++ e ++W++ek + ++s++ ++Dl++v aL++k+ + mKIAA0302 542 LSIQNYHLECTETQAWMREKTKVIESTQGLGnDLAGVLALQRKLAGT 588 eaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLl e++l+a+ +rv +l+++a++L + + + ++++i +rl e+ + We+L+ mKIAA0302 589 ERDLEAIS-ARVGELTQEANALAAGH--PAQAPAINTRLGEVQAGWEDLR 635 elaaeRkqkLee<-* + + +R++ L e mKIAA0302 636 ATMRRREESLGE 647 Spectrin: domain 7 of 16, from 649 to 754: score 74.9, E = 1.7e-18 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe +lq F r +d++++W++ +++ ++se+ + +l +++aLl +H a++ mKIAA0302 649 RRLQDFLRSLDDFQAWLGRTQTAVASEEGPATLPEAEALLAQHAALR 695 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle e++ q + + l l+++++ +++d p+ +++rle+L + We+L + mKIAA0302 696 GEVERAQ-SEYSRLRTLGEEVTRDQAD-PQCLFLRQRLEALGTGWEELGR 743 laaeRkqkLee<-* +++ R+ +L + mKIAA0302 744 MWESRQGRLAQ 754 Spectrin: domain 8 of 16, from 756 to 860: score 63.6, E = 4.3e-15 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe + +q F rda+++e +s +e ls ++++++l+++ a +kk+e+f+ mKIAA0302 756 HGFQGFLRDARQAEGVLSSQEYVLSHTEMPGTLQAADAAIKKLEDFM 802 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle ++a++ +r+++l e +++L+++g +e+i+e+ + +++r ++ +e mKIAA0302 803 STMDANG-ERIRGLLEAGRQLVSKG--NIHAEKIQEKADSIEKRHRKNQE 849 laaeRkqkLee<-* ++++ +L++ mKIAA0302 850 AVQQLLGRLRD 860 Spectrin: domain 9 of 16, from 862 to 965: score 85.6, E = 9.8e-22 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe ++q F +d++el++Wi+ek+ ++++ +y + ++ +++kH+af+ mKIAA0302 862 REQQHFLQDCQELKLWIDEKMLTAQDVSYD-EARNLHTKWQKHQAFM 907 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle aelaa++ d++d +++++++L+ e+ ++ + + e+le+L++rW++L++ mKIAA0302 908 AELAANK-DWLDKVDKEGRELTLEK--PELKVVVSEKLEDLHRRWDELET 954 laaeRkqkLee<-* ++++ + L + mKIAA0302 955 TTQAKARSLFD 965 Spectrin: domain 10 of 16, from 967 to 1070: score 90.7, E = 2.9e-23 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe ++ ++F++ ++ lesW++ +a+l s+dygkDl+sv Llkk++ +e mKIAA0302 967 NRAELFAQSCSALESWLESLQAQLHSDDYGKDLTSVNILLKKQQMLE 1013 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +e+a+++ +v++++++aq+L +e +++ e++ + +++e+++aL++ mKIAA0302 1014 REMAVRE-KEVEAIQAQAQALAQE---DQSAGEVERTSRAVEEKFRALCQ 1059 laaeRkqkLee<-* ++eR ++L++ mKIAA0302 1060 PMKERCRRLHA 1070 Spectrin: domain 11 of 16, from 1072 to 1170: score 70.7, E = 3e-17 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe +++qF+rd++++ +W +e +++ss ++gkDl svq L+kk ++++ mKIAA0302 1072 REQHQFHRDVEDEILWVTERLPMASSLEHGKDLPSVQLLMKKNQTLQ 1118 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +e+++h+ +r+ +l e + L ++ + l+eL e W++L mKIAA0302 1119 KEIQGHE-PRIADLKERQRTLGTAAAG--------PELAELQEMWKRLSH 1159 laaeRkqkLee<-* ++ R ++Lee mKIAA0302 1160 ELELRGKRLEE 1170 Spectrin: domain 12 of 16, from 1172 to 1276: score 92.9, E = 6.4e-24 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe l+ qqF+rda+e+e+W++e+e ++++kD+ s+qa +kkH+ +e mKIAA0302 1172 LRAQQFYRDAAEAEAWMGEQELHMMGQEKAKDELSAQAEVKKHQVLE 1218 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle + la + ++ql + q++i+ hp+s +++ r++++++++++L+e mKIAA0302 1219 QALADYA-QTIKQLAASSQDMIDHE--HPESTRLTIRQAQVDKLYASLKE 1265 laaeRkqkLee<-* la eR+++L+e mKIAA0302 1266 LAGERRERLQE 1276 Spectrin: domain 13 of 16, from 1278 to 1383: score 91.4, E = 1.8e-23 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe l+l q+ r++d+le+Wi+e e ++s ++g+D e+v L +k+++f mKIAA0302 1278 LRLCQLRRELDDLEQWIQEREVVAASHELGQDYEHVTMLRDKFREFS 1324 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle ++ +++q+rvd+ n+la+ Li+ g h + + e+++ Lne+W++Lle mKIAA0302 1325 KDTSTIGQERVDSANALANGLIAGG--HAARATVAEWKDSLNEAWADLLE 1372 laaeRkqkLee<-* l+++R q L + mKIAA0302 1373 LLDTRGQVLAA 1383 Spectrin: domain 14 of 16, from 1385 to 1489: score 74.9, E = 1.7e-18 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe ++lq+F + a+++++ + k+++l + g+Dl +++aL+++H a+e mKIAA0302 1385 YELQRFLHGARQALARVQHKQQQLPDG-TGRDLNAAEALQRRHCAYE 1430 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle ++++a+ ++v+q+++ +q+L+ +++ ++ +eei ++++ e+W++L+ mKIAA0302 1431 HDIQALS-TQVQQVQDDGQRLQKAYA-GDKAEEIGRHMQAVAEAWAQLQG 1478 laaeRkqkLee<-* a+R+q+L++ mKIAA0302 1479 SSAARRQLLLD 1489 Spectrin: domain 15 of 16, from 1491 to 1595: score 68.0, E = 2e-16 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe + ++F++ ++el++W++ + + ++ ++D++s+ +k +++++ mKIAA0302 1491 TDKFRFFKAVRELMLWMDGINLQMDAQERPRDVSSADLVIKNQQGIK 1537 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle ae++a+ dr++++ +++q+L++++ h+++eei e+l++L +r+++ + mKIAA0302 1538 AEIEARA-DRFSSCIDMGQELLARS--HYAAEEISEKLSQLQSRRQETAD 1584 laaeRkqkLee<-* +++e+ +L+ mKIAA0302 1585 KWQEKMDWLQL 1595 Spectrin: domain 16 of 16, from 1597 to 1684: score 12.9, E = 0.064 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe l+ F rda +e+W+ +e+l++s ++g ++++v++L+k+Heaf+ mKIAA0302 1597 LEVLVFGRDAGMAEAWLCSQEPLVRSAELGCTVDEVESLIKRHEAFQ 1643 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle + a++ +r+++l +kL++ ++e+ ++r ee mKIAA0302 1644 KSAVAWE-ERFSAL----EKLTALE--ERENERKRKREEE---------- 1676 laaeRkqkLee<-* eR+++ mKIAA0302 1677 ---ERRKQPPT 1684 PH: domain 1 of 1, from 1803 to 1912: score 59.6, E = 6.8e-14 *->vikeGwLlkkg.........gkkswkkRyfvLfndvLlyykdkk... +eG L +k + + +++ +++sw+ +y+vL++++L +ykd + mKIAA0302 1803 EQMEGMLCRKQemeafnkkaANRSWQNVYCVLRRGSLGFYKDARaas 1849 ..kkpkgsipLsgiqvekvpdn...krkncFeirt.dretlllqaeseee + + g +p+s ++ ++ + +krk++F++ +d++++l+qa++e e mKIAA0302 1850 agVPYHGEVPVSLARAQGSVAFdyrKRKHVFKLGLqDGKEYLFQAKDEAE 1899 rkeWvkaiqsair<-* + +W++ + ai+ mKIAA0302 1900 MSSWLRVVNAAIA 1912 //