hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03146/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0300  ( 1352 res)   mbg03146

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.     135.3    6.6e-36   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/2    1145  1222 ..     1    80 []    59.9  3.2e-13
PDZ        2/2    1272  1350 ..     1    80 []    80.4  2.3e-19

Alignments of top-scoring domains:
PDZ: domain 1 of 2, from 1145 to 1222: score 59.9, E = 3.2e-13
                   *->gglGfsivg.......gifvssvvpGspAakaGrkslglLkvGDvIl
                       glGfs++g+ + +++ ++v +v+  ++A++ G+     +  GD +l
   mKIAA0300  1145    SGLGFSVAGgadvepeSVLVHRVFSQGVASQEGT-----VSQGDFLL 1186 

                   eVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +VNG ts+ gl+h e+ ++l +a      ++v +++++g+   
   mKIAA0300  1187 SVNG-TSLAGLSHSEVTKVLHQAEL---HKHVLMIIKKGN    1222 

PDZ: domain 2 of 2, from 1272 to 1350: score 80.4, E = 2.3e-19
                   *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv
                      +glG+s+ g++++  +++++++++v+ G++A++aG+     + +GD+
   mKIAA0300  1272    AGLGLSLDGgkssiagdgPLVIKRVYQGGAAEQAGT-----IEAGDE 1313 

                   IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   Il++NG +++ gl h +a +++k+ ++g    +v+L++++     
   mKIAA0300  1314 ILAING-KPLVGLVHFDAWNIMKSVPEG----PVQLVIRKHR    1350 

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