hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15779/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0299  ( 333 res)   mbg15779

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3      Src homology 3 domains                          45.6    6.5e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3        1/1      93   150 ..     1    58 []    45.6  6.5e-09

Alignments of top-scoring domains:
SH3: domain 1 of 1, from 93 to 150: score 45.6, E = 6.5e-09
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnr.tGke
                      +y v+++++ ++ ++ L ++ G+++++lek  +gW++G   ++ + +
   mKIAA0299    93    KYGVVICSFRGSVPQGLVLEIGETVQILEK-CEGWYRGVSTKkPNVK 138  

                   GlfPsnYVeeie<-*
                   GlfP+nY+ +++   
   mKIAA0299   139 GLFPANYIHLKK    150  

//