hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15779/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0299  ( 333 res)   mbg15779

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3_2    Variant SH3 domain                              39.8      6e-08   1
SH3_1    SH3 domain                                      20.8     0.0012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3_2      1/1      94   148 ..     1    69 []    39.8    6e-08
SH3_1      1/1      93   149 ..     1    58 []    20.8   0.0012

Alignments of top-scoring domains:
SH3_2: domain 1 of 1, from 94 to 148: score 39.8, E = 6e-08
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl
                      yg++i+++ + + +++      L l+ G++v ++     ++ +gw++
   mKIAA0299    94    YGVVICSFRG-SVPQG------LVLEIGETVQIL-----EKCEGWYR 128  

                   geslgg.GrrrRGlvPssaveel<-*
                   g s+++++++  Gl+P++++ +l   
   mKIAA0299   129 GVSTKKpNVK--GLFPANYI-HL    148  

SH3_1: domain 1 of 1, from 93 to 149: score 20.8, E = 0.0012
                   *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke
                      k+ v++  + ++ ++ L ++ G+++++lek ++ W++g +    + +
   mKIAA0299    93    KYGVVICSFRGSVPQGLVLEIGETVQILEKCEG-WYRGVSTKKPNVK 138  

                   GliPsNYVepv<-*
                   Gl+P+NY+ ++   
   mKIAA0299   139 GLFPANYIHLK    149  

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