hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08362/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0298  ( 208 res)   mbg08362

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BROMO    bromo domain                                   104.3    1.4e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BROMO      1/1      35   141 ..     1   118 []   104.3  1.4e-26

Alignments of top-scoring domains:
BROMO: domain 1 of 1, from 35 to 141: score 104.3, E = 1.4e-26
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      s+ +qkk+++l  +l +   s             pF+epv++    +
   mKIAA0298    35    SMYdQKKCEKLVLSLCCNSLSL------------PFHEPVSPL---A 66   

                   PDYydiIkkPMDLktIkkkleng...kYssleeFvaDfnLmfsNAktYNe
                     Yy+iIk+PMDL+ I++kl++ ++ +Y+++ee v D++Lmf+N+ ++N 
   mKIAA0298    67 RHYYQIIKRPMDLSIIRRKLQKKdpaHYTTPEEVVSDVRLMFWNCAKFNY 116  

                   pdsevykdAkkLeklfeeklkelpp<-*
                   pdsev ++++ Le +fe +lke++p   
   mKIAA0298   117 PDSEVAEAGRCLEVFFEGWLKEIYP    141  

//