hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08362/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0298  ( 208 res)   mbg08362

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Bromodomain Bromodomain                                  84.1    2.8e-21   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Bromodomain   1/1      35   127 ..     1    92 []    84.1  2.8e-21

Alignments of top-scoring domains:
Bromodomain: domain 1 of 1, from 35 to 127: score 84.1, E = 2.8e-21
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                        + ++k+ + +++  +++l+ +f + p+   +  YY+iIk+PMDL+
   mKIAA0298    35    SMYDQKKCEKLVLSLCCNSLSLPFHE-PVSPLARHYYQIIKRPMDLS 80   

                   TIkkklkngk...YissleeFvaDfnLmfsNAktYNepdsevykdAkk<-
                    I++kl++  + +Y +++ee v D++Lmf+N+ ++N pdsev ++++   
   mKIAA0298    81 IIRRKLQKKDpahY-TTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRC   127  

                   *
                    
   mKIAA0298     -   -    

//