hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbf/mbf03436/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0297  ( 1431 res)   mbf03436

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Hyd_WA   Propeller                                      244.4    1.6e-69   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Hyd_WA     1/7     842   869 ..     1    34 []     3.2       26
Hyd_WA     2/7     966   997 ..     1    34 []    43.2  5.9e-09
Hyd_WA     3/7    1015  1048 ..     1    34 []    38.2  1.9e-07
Hyd_WA     4/7    1200  1230 ..     1    34 []    41.9  1.5e-08
Hyd_WA     5/7    1247  1280 ..     1    34 []    43.6  4.4e-09
Hyd_WA     6/7    1300  1331 ..     1    34 []    46.0  8.1e-10
Hyd_WA     7/7    1343  1374 ..     1    34 []    43.2  5.8e-09

Alignments of top-scoring domains:
Hyd_WA: domain 1 of 7, from 842 to 869: score 3.2, E = 26
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                        +W+++ ++G +f     s+   +G + W++ +   
   mKIAA0297   842    KFLWCLD-YKGGLF----CSPLPGAGLR-WQRFE    869  

Hyd_WA: domain 2 of 7, from 966 to 997: score 43.2, E = 5.9e-09
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                       +VWa+t  ++ +++R+GVs+ +P+G+  W++ +   
   mKIAA0297   966    SVVWALT-EQRALLYREGVSSFCPEGEQ-WKCDI    997  

Hyd_WA: domain 3 of 7, from 1015 to 1048: score 38.2, E = 1.9e-07
                   *->daVWaitasdGdifvRtGVsrsnPsGsd.aWehil<-*
                       ++Wa++  +G++++RtGV ++ P+G+d++W+++    
   mKIAA0297  1015    HTLWALD-IHGKLWFRTGVVPKKPQGDDdHWWQVS    1048 

Hyd_WA: domain 4 of 7, from 1200 to 1230: score 41.9, E = 1.5e-08
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                      da+Wa++ s G++f+R   s+s+P+G++ W+ ++   
   mKIAA0297  1200    DALWALD-SLGQVFIR-TLSKSCPTGMH-WTKLD    1230 

Hyd_WA: domain 5 of 7, from 1247 to 1280: score 43.6, E = 4.4e-09
                   *->daVWaitasdGdifvRtGVsrsnPsGsd.aWehil<-*
                      +++Wa++ s+G +++R+G ++ nPs++ +aW++i+   
   mKIAA0297  1247    QHIWACD-SRGGVYFRVGTQPLNPSLMLpAWIMIE    1280 

Hyd_WA: domain 6 of 7, from 1300 to 1331: score 46.0, E = 8.1e-10
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                      + +Wa++ s+ ++ vRtG++++ P G+d Weh++   
   mKIAA0297  1300    QMLWALD-SRWNVHVRTGITEEMPVGTD-WEHVP    1331 

Hyd_WA: domain 7 of 7, from 1343 to 1374: score 43.2, E = 5.8e-09
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                       +VWa +  +Gd+++R+G++ +nP+G++ W+ i+   
   mKIAA0297  1343    RTVWARC-PNGDLARRYGITDKNPAGDY-WKKIP    1374 

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