hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file: /cdna4/rodent/full/goal/mpf/mpf00724/w3open/interpro/cnk_1/seq.in
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Query: mKIAA0296 ( 1541 res) mpf00724
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ZnF_C2H2 zinc finger 421.7 3.9e-122 26
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ZnF_C2H2 1/26 18 40 .. 1 23 [] 23.9 0.022
ZnF_C2H2 2/26 46 68 .. 1 23 [] 26.1 0.0049
ZnF_C2H2 3/26 126 148 .. 1 23 [] 21.5 0.12
ZnF_C2H2 4/26 153 175 .. 1 23 [] 24.2 0.018
ZnF_C2H2 5/26 217 239 .. 1 23 [] 24.7 0.013
ZnF_C2H2 6/26 244 266 .. 1 23 [] 28.2 0.0011
ZnF_C2H2 7/26 326 348 .. 1 23 [] 19.3 0.53
ZnF_C2H2 8/26 366 388 .. 1 23 [] 24.5 0.014
ZnF_C2H2 9/26 393 415 .. 1 23 [] 20.0 0.34
ZnF_C2H2 10/26 566 588 .. 1 23 [] 19.5 0.48
ZnF_C2H2 11/26 593 615 .. 1 23 [] 28.7 0.0008
ZnF_C2H2 12/26 626 649 .. 1 23 [] 20.4 0.25
ZnF_C2H2 13/26 701 721 .. 1 23 [] 3.3 1.4e+02
ZnF_C2H2 14/26 795 817 .. 1 23 [] 26.3 0.0043
ZnF_C2H2 15/26 822 844 .. 1 23 [] 25.4 0.0078
ZnF_C2H2 16/26 930 952 .. 1 23 [] 26.5 0.0036
ZnF_C2H2 17/26 957 979 .. 1 23 [] 21.5 0.12
ZnF_C2H2 18/26 985 1007 .. 1 23 [] 28.7 0.00082
ZnF_C2H2 19/26 1026 1046 .. 1 23 [] 5.5 75
ZnF_C2H2 20/26 1053 1075 .. 1 23 [] 28.7 0.00082
ZnF_C2H2 21/26 1093 1115 .. 1 23 [] 22.2 0.072
ZnF_C2H2 22/26 1310 1332 .. 1 23 [] 24.7 0.013
ZnF_C2H2 23/26 1400 1422 .. 1 23 [] 20.5 0.24
ZnF_C2H2 24/26 1427 1449 .. 1 23 [] 21.8 0.095
ZnF_C2H2 25/26 1455 1477 .. 1 23 [] 21.9 0.09
ZnF_C2H2 26/26 1484 1506 .. 1 23 [] 23.3 0.033
Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 26, from 18 to 40: score 23.9, E = 0.022
*->ykCpigCgksfssk.aLkrHmrvH<-*
y C+i C k fs+ aLk+H r H
mKIAA0296 18 YPCSI-CFKEFSNLmALKNHSRLH 40
ZnF_C2H2: domain 2 of 26, from 46 to 68: score 26.1, E = 0.0049
*->ykCpigCgksfssk.aLkrHmrvH<-*
y+Cp+ C++ f+ +++L +H+++H
mKIAA0296 46 YHCPH-CPRAFRLPrDLLEHQQSH 68
ZnF_C2H2: domain 3 of 26, from 126 to 148: score 21.5, E = 0.12
*->ykCpigCgksfssk.aLkrHmrvH<-*
+ C Cg++++++++L++H ++H
mKIAA0296 126 FCCGD-CGRTYRHAgSLINHRKSH 148
ZnF_C2H2: domain 4 of 26, from 153 to 175: score 24.2, E = 0.018
*->ykCpigCgksfssk.aLkrHmrvH<-*
y C+i C+k+ ++ aLk+H+r H
mKIAA0296 153 YPCSI-CSKQLFNAaALKNHIRAH 175
ZnF_C2H2: domain 5 of 26, from 217 to 239: score 24.7, E = 0.013
*->ykCpigCgksfssk.aLkrHmrvH<-*
ykC++ Cg+ ++++++L++H +H
mKIAA0296 217 YKCNE-CGRAYRHRgSLVNHRHSH 239
ZnF_C2H2: domain 6 of 26, from 244 to 266: score 28.2, E = 0.0011
*->ykCpigCgksfssk.aLkrHmrvH<-*
y+C++ C++++++ aL++H+rvH
mKIAA0296 244 YQCSL-CPRKYPNLmALRNHVRVH 266
ZnF_C2H2: domain 7 of 26, from 326 to 348: score 19.3, E = 0.53
*->ykCpigCgksfssk.aLkrHmrvH<-*
+C+i Cg+ f + ++L++H +H
mKIAA0296 326 QVCSI-CGMLFEDLkSLEHHSVTH 348
ZnF_C2H2: domain 8 of 26, from 366 to 388: score 24.5, E = 0.014
*->ykCpigCgksfssk.aLkrHmrvH<-*
+ C+ Cgks+++ ++L++H ++H
mKIAA0296 366 FACQD-CGKSYRHSgSLINHRQTH 388
ZnF_C2H2: domain 9 of 26, from 393 to 415: score 20.0, E = 0.34
*->ykCpigCgksfssk.aLkrHmrvH<-*
+ C C k+f++ a+k H+r+H
mKIAA0296 393 FSCGA-CAKHFHTMaAMKSHLRRH 415
ZnF_C2H2: domain 10 of 26, from 566 to 588: score 19.5, E = 0.48
*->ykCpigCgksfssk.aLkrHmrvH<-*
++C+ Cg sfs++ L H H
mKIAA0296 566 HTCSD-CGDSFSHAaGLLSHRSCH 588
[output cut off at A = 10 top alignments]
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