hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpf/mpf00724/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0296 ( 1541 res) mpf00724 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 421.7 3.9e-122 26 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/26 18 40 .. 1 23 [] 23.9 0.022 ZnF_C2H2 2/26 46 68 .. 1 23 [] 26.1 0.0049 ZnF_C2H2 3/26 126 148 .. 1 23 [] 21.5 0.12 ZnF_C2H2 4/26 153 175 .. 1 23 [] 24.2 0.018 ZnF_C2H2 5/26 217 239 .. 1 23 [] 24.7 0.013 ZnF_C2H2 6/26 244 266 .. 1 23 [] 28.2 0.0011 ZnF_C2H2 7/26 326 348 .. 1 23 [] 19.3 0.53 ZnF_C2H2 8/26 366 388 .. 1 23 [] 24.5 0.014 ZnF_C2H2 9/26 393 415 .. 1 23 [] 20.0 0.34 ZnF_C2H2 10/26 566 588 .. 1 23 [] 19.5 0.48 ZnF_C2H2 11/26 593 615 .. 1 23 [] 28.7 0.0008 ZnF_C2H2 12/26 626 649 .. 1 23 [] 20.4 0.25 ZnF_C2H2 13/26 701 721 .. 1 23 [] 3.3 1.4e+02 ZnF_C2H2 14/26 795 817 .. 1 23 [] 26.3 0.0043 ZnF_C2H2 15/26 822 844 .. 1 23 [] 25.4 0.0078 ZnF_C2H2 16/26 930 952 .. 1 23 [] 26.5 0.0036 ZnF_C2H2 17/26 957 979 .. 1 23 [] 21.5 0.12 ZnF_C2H2 18/26 985 1007 .. 1 23 [] 28.7 0.00082 ZnF_C2H2 19/26 1026 1046 .. 1 23 [] 5.5 75 ZnF_C2H2 20/26 1053 1075 .. 1 23 [] 28.7 0.00082 ZnF_C2H2 21/26 1093 1115 .. 1 23 [] 22.2 0.072 ZnF_C2H2 22/26 1310 1332 .. 1 23 [] 24.7 0.013 ZnF_C2H2 23/26 1400 1422 .. 1 23 [] 20.5 0.24 ZnF_C2H2 24/26 1427 1449 .. 1 23 [] 21.8 0.095 ZnF_C2H2 25/26 1455 1477 .. 1 23 [] 21.9 0.09 ZnF_C2H2 26/26 1484 1506 .. 1 23 [] 23.3 0.033 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 26, from 18 to 40: score 23.9, E = 0.022 *->ykCpigCgksfssk.aLkrHmrvH<-* y C+i C k fs+ aLk+H r H mKIAA0296 18 YPCSI-CFKEFSNLmALKNHSRLH 40 ZnF_C2H2: domain 2 of 26, from 46 to 68: score 26.1, E = 0.0049 *->ykCpigCgksfssk.aLkrHmrvH<-* y+Cp+ C++ f+ +++L +H+++H mKIAA0296 46 YHCPH-CPRAFRLPrDLLEHQQSH 68 ZnF_C2H2: domain 3 of 26, from 126 to 148: score 21.5, E = 0.12 *->ykCpigCgksfssk.aLkrHmrvH<-* + C Cg++++++++L++H ++H mKIAA0296 126 FCCGD-CGRTYRHAgSLINHRKSH 148 ZnF_C2H2: domain 4 of 26, from 153 to 175: score 24.2, E = 0.018 *->ykCpigCgksfssk.aLkrHmrvH<-* y C+i C+k+ ++ aLk+H+r H mKIAA0296 153 YPCSI-CSKQLFNAaALKNHIRAH 175 ZnF_C2H2: domain 5 of 26, from 217 to 239: score 24.7, E = 0.013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cg+ ++++++L++H +H mKIAA0296 217 YKCNE-CGRAYRHRgSLVNHRHSH 239 ZnF_C2H2: domain 6 of 26, from 244 to 266: score 28.2, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C++++++ aL++H+rvH mKIAA0296 244 YQCSL-CPRKYPNLmALRNHVRVH 266 ZnF_C2H2: domain 7 of 26, from 326 to 348: score 19.3, E = 0.53 *->ykCpigCgksfssk.aLkrHmrvH<-* +C+i Cg+ f + ++L++H +H mKIAA0296 326 QVCSI-CGMLFEDLkSLEHHSVTH 348 ZnF_C2H2: domain 8 of 26, from 366 to 388: score 24.5, E = 0.014 *->ykCpigCgksfssk.aLkrHmrvH<-* + C+ Cgks+++ ++L++H ++H mKIAA0296 366 FACQD-CGKSYRHSgSLINHRQTH 388 ZnF_C2H2: domain 9 of 26, from 393 to 415: score 20.0, E = 0.34 *->ykCpigCgksfssk.aLkrHmrvH<-* + C C k+f++ a+k H+r+H mKIAA0296 393 FSCGA-CAKHFHTMaAMKSHLRRH 415 ZnF_C2H2: domain 10 of 26, from 566 to 588: score 19.5, E = 0.48 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+ Cg sfs++ L H H mKIAA0296 566 HTCSD-CGDSFSHAaGLLSHRSCH 588 [output cut off at A = 10 top alignments] //