hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpf/mpf00724/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0296 ( 1541 res) mpf00724 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 441.9 5.4e-129 27 C1_4 TFIIH C1-like domain -12.4 0.56 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-C2H2 1/27 18 40 .. 1 24 [] 27.0 0.00044 zf-C2H2 2/27 46 68 .. 1 24 [] 26.4 0.00064 zf-C2H2 3/27 126 148 .. 1 24 [] 27.3 0.00036 zf-C2H2 4/27 153 175 .. 1 24 [] 23.6 0.0047 zf-C2H2 5/27 217 239 .. 1 24 [] 28.3 0.00018 zf-C2H2 6/27 244 266 .. 1 24 [] 25.7 0.0011 zf-C2H2 7/27 326 348 .. 1 24 [] 18.6 0.15 zf-C2H2 8/27 366 388 .. 1 24 [] 32.5 9.8e-06 zf-C2H2 9/27 393 415 .. 1 24 [] 17.0 0.45 zf-C2H2 10/27 566 588 .. 1 24 [] 15.8 1 zf-C2H2 11/27 593 615 .. 1 24 [] 24.1 0.0032 zf-C2H2 12/27 626 649 .. 1 24 [] 16.2 0.77 zf-C2H2 13/27 701 723 .. 1 24 [] 6.8 22 zf-C2H2 14/27 795 817 .. 1 24 [] 29.6 7.1e-05 zf-C2H2 15/27 822 844 .. 1 24 [] 25.1 0.0016 zf-C2H2 16/27 930 952 .. 1 24 [] 30.0 5.5e-05 zf-C2H2 17/27 957 979 .. 1 24 [] 24.0 0.0034 zf-C2H2 18/27 985 1007 .. 1 24 [] 33.2 6e-06 zf-C2H2 19/27 1026 1048 .. 1 24 [] 14.2 3.1 zf-C2H2 20/27 1053 1075 .. 1 24 [] 30.6 3.5e-05 zf-C2H2 21/27 1093 1115 .. 1 24 [] 20.3 0.046 zf-C2H2 22/27 1258 1289 .. 1 24 [] -3.6 2.2e+02 C1_4 1/1 1285 1321 .. 1 55 [] -12.4 0.56 zf-C2H2 23/27 1310 1332 .. 1 24 [] 26.1 0.00081 zf-C2H2 24/27 1400 1422 .. 1 24 [] 25.2 0.0015 zf-C2H2 25/27 1427 1449 .. 1 24 [] 18.2 0.19 zf-C2H2 26/27 1455 1477 .. 1 24 [] 28.4 0.00017 zf-C2H2 27/27 1484 1506 .. 1 24 [] 22.2 0.013 Alignments of top-scoring domains: zf-C2H2: domain 1 of 27, from 18 to 40: score 27.0, E = 0.00044 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C k Fs+ Lk+H r H mKIAA0296 18 YPCS-ICFKEFSNLMALKNHSRLH 40 zf-C2H2: domain 2 of 27, from 46 to 68: score 26.4, E = 0.00064 *->ykCpfdCgksFsrksnLkrHlrtH<-* y Cp +C ++F+ + +L H+++H mKIAA0296 46 YHCP-HCPRAFRLPRDLLEHQQSH 68 zf-C2H2: domain 3 of 27, from 126 to 148: score 27.3, E = 0.00036 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C dCg+++++ ++L +H+++H mKIAA0296 126 FCCG-DCGRTYRHAGSLINHRKSH 148 zf-C2H2: domain 4 of 27, from 153 to 175: score 23.6, E = 0.0047 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C k + + Lk+H+r H mKIAA0296 153 YPCS-ICSKQLFNAAALKNHIRAH 175 zf-C2H2: domain 5 of 27, from 217 to 239: score 28.3, E = 0.00018 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++++++++L +H+ +H mKIAA0296 217 YKCN-ECGRAYRHRGSLVNHRHSH 239 zf-C2H2: domain 6 of 27, from 244 to 266: score 25.7, E = 0.0011 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ C +++ + L++H r+H mKIAA0296 244 YQCS-LCPRKYPNLMALRNHVRVH 266 zf-C2H2: domain 7 of 27, from 326 to 348: score 18.6, E = 0.15 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +Cg F + ++L++H tH mKIAA0296 326 QVCS-ICGMLFEDLKSLEHHSVTH 348 zf-C2H2: domain 8 of 27, from 366 to 388: score 32.5, E = 9.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ dCgks++++++L +H++tH mKIAA0296 366 FACQ-DCGKSYRHSGSLINHRQTH 388 zf-C2H2: domain 9 of 27, from 393 to 415: score 17.0, E = 0.45 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C C k F + + +k+Hlr+H mKIAA0296 393 FSCG-ACAKHFHTMAAMKSHLRRH 415 zf-C2H2: domain 10 of 27, from 566 to 588: score 15.8, E = 1 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCg sFs+ + L +H+ H mKIAA0296 566 HTCS-DCGDSFSHAAGLLSHRSCH 588 zf-C2H2: domain 11 of 27, from 593 to 615: score 24.1, E = 0.0032 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ C k F + L++H +tH mKIAA0296 593 YQCS-LCPKEFDSLPALRSHFQTH 615 zf-C2H2: domain 12 of 27, from 626 to 649: score 16.2, E = 0.77 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C Cg F + ++rHlr H mKIAA0296 626 FLCC-LCGMIFPGRTGYRRHLRQaH 649 zf-C2H2: domain 13 of 27, from 701 to 723: score 6.8, E = 22 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C Cg+++ + ++L+rH ++ mKIAA0296 701 HICG-CCGQTYDDLGSLERHHQSQ 723 zf-C2H2: domain 14 of 27, from 795 to 817: score 29.6, E = 7.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk++++ ++L +H+++H mKIAA0296 795 FQCN-QCGKTYRHGGSLVNHRKIH 817 zf-C2H2: domain 15 of 27, from 822 to 844: score 25.1, E = 0.0016 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp +C +++ + + +++Hlr H mKIAA0296 822 FICP-VCSRCYPNLAAYRNHLRNH 844 zf-C2H2: domain 16 of 27, from 930 to 952: score 30.0, E = 5.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg+++++ ++L +H+++H mKIAA0296 930 FSCE-VCGRTYKHAGSLINHRQSH 952 zf-C2H2: domain 17 of 27, from 957 to 979: score 24.0, E = 0.0034 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ C k Fs+ +Lk+H+r+H mKIAA0296 957 FGCQ-ACSKGFSNLMSLKNHRRIH 979 zf-C2H2: domain 18 of 27, from 985 to 1007: score 33.2, E = 6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+ +++L +H+r+H mKIAA0296 985 FRCS-ECGKAFRLRKQLANHQRVH 1007 zf-C2H2: domain 19 of 27, from 1026 to 1048: score 14.2, E = 3.1 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cg+++++ ++L +H+ mKIAA0296 1026 FRCG-QCGRTYRHAGSLMNHQCNP 1048 zf-C2H2: domain 20 of 27, from 1053 to 1075: score 30.6, E = 3.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp C k++s++ Lk H+r+H mKIAA0296 1053 YSCP-FCFKTYSNRTALKDHQRVH 1075 zf-C2H2: domain 21 of 27, from 1093 to 1115: score 20.3, E = 0.046 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ Cg Fs +++L++Hl+ H mKIAA0296 1093 VRCT-LCGCGFSGQGSLEQHLQEH 1115 zf-C2H2: domain 22 of 27, from 1258 to 1289: score -3.6, E = 2.2e+02 *->ykCpfdCgksFsrksnLkr........Hlrt.H<-* + C+ +Cgk++++++ L +++ ++++ H+ + mKIAA0296 1258 HCCS-QCGKAYCQPDGLLNpsingkdcHICLlC 1289 C1_4: domain 1 of 1, from 1285 to 1321: score -12.4, E = 0.56 *->nCyGCqkklpdginkksdesltSsvYrCpkCknvFCiDCDvFIHEsL C C k++ ++ + +t ++++C +C +v mKIAA0296 1285 ICLLCSKEFLNPVTTEIHNHTTAQRFACSNCSKV------------- 1318 HnCPGCes<-* Ces mKIAA0296 1319 -----CES 1321 zf-C2H2: domain 23 of 27, from 1310 to 1332: score 26.1, E = 0.00081 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ C k++ ++s+L +H++tH mKIAA0296 1310 FACS-NCSKVCESHSELATHMKTH 1332 zf-C2H2: domain 24 of 27, from 1400 to 1422: score 25.2, E = 0.0015 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C +Cg+s+++ ++L +H++ H mKIAA0296 1400 FCCA-QCGRSYRHAGSLLNHQKAH 1422 zf-C2H2: domain 25 of 27, from 1427 to 1449: score 18.2, E = 0.19 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C k + +Lk+H rtH mKIAA0296 1427 YPCS-LCPKLLPNLLSLKNHSRTH 1449 zf-C2H2: domain 26 of 27, from 1455 to 1477: score 28.4, E = 0.00017 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ + L+ H r+H mKIAA0296 1455 YSCN-ICGKAFRTAARLQGHGRVH 1477 zf-C2H2: domain 27 of 27, from 1484 to 1506: score 22.2, E = 0.013 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C ++F+++ ++ rH++ H mKIAA0296 1484 FTCS-HCPRRFRHRISFLRHQQQH 1506 //