hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02039/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0294  ( 1324 res)   mbg02039

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   Guanine nucleotide exchange factor for Rho/R   207.0    1.7e-57   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1     380   562 ..     1   211 []   207.0  1.7e-57

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 380 to 562: score 207.0, E = 1.7e-57
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      +l  ++++E+nYV+ L+ ++e + kpL++++ +    lls+++++++
   mKIAA0294   380    ILGSIVESEKNYVDALRRILEQYEKPLSEMEPR----LLSDRKLRMV 422  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   F+ ++ ei+++H+ F ++L  rv+ew               d +e+igdv
   mKIAA0294   423 FY-RVKEILQCHSMFQIALASRVSEW---------------DVVETIGDV 456  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                   F+++fs++  +++YseY++n++ a+++lkk  +++++paF +flk  + +
   mKIAA0294   457 FVASFSKSMVLDAYSEYVNNFSTAVAVLKK--TCATKPAFLEFLKLSQDS 504  

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                   ++ r       tL sl++ P+QR+++ +LLL+++lk+t ++h+dr  L++
   mKIAA0294   505 SPDR------VTLHSLMMRPIQRFPQFILLLQDMLKNTAKGHPDRLPLQM 548  

                   AleaikelasqvNe<-*
                   Al  +++la+++Ne   
   mKIAA0294   549 ALTELETLAEKLNE    562  

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