hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02039/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0294  ( 1324 res)   mbg02039

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   RhoGEF domain                                  125.5    9.8e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1     380   562 ..     1   207 []   125.5  9.8e-34

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 380 to 562: score 125.5, E = 9.8e-34
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskpvltpddietiF
                      +l +++e+Ek+Yv+ L+ ++  y kpL e  + +  +l+ +++ ++F
   mKIAA0294   380    ILGSIVESEKNYVDALRRILEQYEKPLSE--MEP-RLLSDRKLRMVF 423  

                   sNiediyefhreFLkssLearisssqfedlDekkiepsaqrlGdlFlkl.
                     + +i++ h+ F + +L  r+s++           +  +++Gd+F ++ 
   mKIAA0294   424 YRVKEILQCHSMFQI-ALASRVSEW-----------DVVETIGDVFVASf 461  

                   .kepflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA
                   +k+  l+ Y eY++n+  A+ +l+k   +a+ p+F efl+  + ss  + 
   mKIAA0294   462 sKSMVLDAYSEYVNNFSTAVAVLKK--TCATKPAFLEFLKLSQDSSP-D- 507  

                   kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLkkal
                        ++tL sL++ P+qR +  +LLL++ Lk t    ++pdr  L+ al
   mKIAA0294   508 -----RVTLHSLMMRPIQRFPQFILLLQDMLKNTAK--GHPDRLPLQMAL 550  

                   dllqdlaksiNe<-*
                     l++la+ +Ne   
   mKIAA0294   551 TELETLAEKLNE    562  

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