hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10230/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0292  ( 1725 res)   mbg10230

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD zinc finger                                 34.8    1.2e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1    1651  1698 ..     1    39 []    34.8  1.2e-05

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 1651 to 1698: score 34.8, E = 1.2e-05
                   *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgpple...epdg.wyCprC
                       C++C++ g +l+C +kgC+  yH++C+  +++  +e++++ +Cp++
   mKIAA0292  1651    KCsHCQEaGaTLGCYnKGCSFRYHYpCAIDADCllhEENFsVRCPKH 1697 

                   k<-*
                   k   
   mKIAA0292  1698 K    1698 

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