hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj01134/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0291 ( 993 res) mfj01134 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CAP_GLY CAP-Gly domain 157.5 2.3e-43 2 Filament Intermediate filament protein -193.2 0.9 1 Myosin_tail_1 Myosin tail -518.5 0.43 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CAP_GLY 1/2 95 160 .. 1 74 [] 132.8 6.4e-36 CAP_GLY 2/2 235 287 .. 1 74 [] 31.4 2.9e-06 Filament 1/1 591 868 .. 1 359 [] -193.2 0.9 Myosin_tail_1 1/1 268 967 .. 1 863 [] -518.5 0.43 Alignments of top-scoring domains: CAP_GLY: domain 1 of 2, from 95 to 160: score 132.8, E = 6.4e-36 *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN +G+RV+v+g ++G+V Y Get+fapG+ W+GV+LD+P+ GKN mKIAA0291 95 VGERVWVNG----VKPGVVQYLGETQFAPGQ--WAGVVLDDPV-GKN 134 DGsvkGvrYFqCegpkyGiFvrpskve<-* DG v+GvrYF+C+ +GiF rpsk++ mKIAA0291 135 DGAVGGVRYFECP-ALQGIFTRPSKLT 160 CAP_GLY: domain 2 of 2, from 235 to 287: score 31.4, E = 2.9e-06 *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN +G+RV+vgg +++G+VRYvGetdfa+G+ W+GVELDe mKIAA0291 235 LGDRVLVGG----TKTGVVRYVGETDFAKGE--WCGVELDETQ---- 271 DGsvkGvrYFqCegpkyGiFvrpskve<-* vr + p+ +p+ + mKIAA0291 272 ------VRSLCTN-PQG----HPNWLP 287 Filament: domain 1 of 1, from 591 to 868: score -193.2, E = 0.9 *->nEKeqmQnLNDRLAsYIdKVRfLE....qqNkeLevkieelrqkqsr +E +++ L I+ ++LE ++ q++++Le+ + ++k+ + mKIAA0291 591 KEIGELKAL----VEGIKMEHQLElgnlQAKHDLET---AMHGKEKE 630 ggpasvsrlyslYeteieeLRrqi.dqltnerarlqlEidnlrealedfr +++ + ++e++ L++ ++ql+ + ++ lE+ +++ +d + mKIAA0291 631 ----GLRQKLQEVQEELAGLQQHWrEQLEEQASQHRLELQEAQDQCRDAQ 676 kKyedKeDLaaQnqlkdlEialntkeaeLaTaLeRqeaEndlvgLRaQiA ++ ++ lE e ++ ++ L++Qi mKIAA0291 677 LRAQE------------LEGLD----------VEYRGQAQAIEFLKEQIS 704 klEslaaRkdlDeaTLarvDLEnkvEsLqEElaFLKknHeEEvkeLqaqi +E +k lD ++L+r +++ + E+ E ++e + mKIAA0291 705 LAE----KKMLDYEMLQRAEAQSRQEA-------------ERLREKLLVA 737 qdtgqvnVEmDaarqqEwklDLtkaLrEiRaQYEeiAeknrqeaEewYks + + + ++ + aQ+ +e + E mKIAA0291 738 ENR----LQAAESL----CS----------AQHSHVIESSDLSEE----- 764 KleeLqtaaarngealrsaKeEitElRRqiQsLeiELqslksqnasLErq + ++++++ + l E+t l q++ L++++ +l+++++s E++ mKIAA0291 765 -TIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKK 813 laEl...EeryeaelaqyqalisqlEeeLqqlreEM...arqLrEYQeLL ++ l ++++r+eael+ ++ ++ +L ++ +E+ +++r L E+ LL mKIAA0291 814 IDSLlkeKRRLEAELEAVSRKTHDASGQLVHISQELlrkERSLNELRVLL 863 dVKlaLDiEIATYRKLLEGEEsR<-* L++ +R mKIAA0291 864 -----LEA-------------NR 868 Myosin_tail_1: domain 1 of 1, from 268 to 967: score -518.5, E = 0.43 *->dlerqkrelee.qlkrkeselsqlslklEdEqalvaqLqkkikelea d + +++ +++q +++q s Ed ++++ + mKIAA0291 268 DETQVRSLCTNpQGHPNWLPIHQSSQGQED-----QTHGHGCLRFDP 309 RIeELeEeLEaERaARaKaEkqRaDLsrELEeLsERLeEagGaTaaQiEl + + +E+L aER++ +aE ++ aT++ E+ mKIAA0291 310 QPQQHIEQLLAERDL-ERAEVAK-------------------ATSHICEV 339 nkKREaELaKLRrdLEEanlqhEealatLRKKHqdainElsdQieqLqKq E +a L+++H + ++E + + ++ mKIAA0291 340 ----------------------EKEIALLKAQHEQYVAEAEEKLQRARLL 367 KakaEKeKsqlqaEvddlaaqldqiaKaKlnaEKkakq.lEsqlsElqvK + KeK l + +++ + ++ + + + E++ k++lE+q++ ++ mKIAA0291 368 VENVRKEKVDLSNQLEEERRKVEDLQ-FRVEEESITKGdLETQTQLEHAR 416 ldElqRqlnDltsqKsRLqsENsdLtrqleEaEaqvsqlsklKsqlesQL + El+ +l +q RL E+ d + +++v ql s ++ mKIAA0291 417 IGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEI 466 EeAkRsl.............EEEsReRanLqaqlrnlehDlDslrEqlEE Ee+++ l ++++++ ++++ E R R L + + ++D l+ ++E mKIAA0291 467 EELQHCLlqsgpppadhpeaAETLRLRERLLSASKEHQRDSTLLQDKYE- 515 EsEAKaeleRqLsKanaeiqqwrsKfEsEgalraEElEElKkKlnqkisE + L+ ++e++ +r +++ a+ E+ +lK K +q ++E mKIAA0291 516 ---------HMLKTYQTEVDKLRA-ANEKYAQ---EVADLKAKVQQATTE 552 lEeaaEaanaKcssLEKtKsRLqsElEDlqievEranaaaseLEKKqknF ++ Ks+L s + D q+ +E++ a+ ++ +q mKIAA0291 553 ----------NMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQ-- 590 DKilaEwKkkvdelqaEletAqreaRnlstElfrlKneleElkD..qvEa K + E+K+ v+ + E +l+ ++ K+ le++ ++ +E+ mKIAA0291 591 -KEIGELKALVEGIKME--------HQLELGNLQAKHDLETAMHgkEKEG 631 LrRENKnLqdEikDLtdqLgEgGRnvHELEKarRrLEaEkdELqaALeEA Lr + + q+E+ L +E LE ++ E+ E+q + +A mKIAA0291 632 LRQKLQEVQEELAGLQQHWRE------QLEEQASQHRLELQEAQDQCRDA 675 EaALeqeEsKvlRaqvElsqiRsEiERRLaEKEEEfEntRKnhqraiesL lRaq El E+++ +++ +aie L mKIAA0291 676 ----------QLRAQ-EL---------------EGLDVEYRGQAQAIEFL 699 qasLaEaEaKgKaEalRlKKKLEgdInELEiaLDhaNkanaeaqKnvKky + ++ aE K+ LD ++aeaq + mKIAA0291 700 KEQISLAEKKM---------------------LDYEMLQRAEAQ--SRQE 726 qqqvkeLQtqvEeeQRaredareqlavaERRataLqaElEELrvaLeqae +++++e + +E + l++aE ++a + + E e ++ mKIAA0291 727 AERLREKLLVAE----------NRLQAAESLCSAQHSHVIESSDLSEETI 766 RaRKqAEtElaEaser...vneLtaqnssLiaqKRKLEgelaalqsDLDE R + ++E + ++ r+++v+ Lt+q L aq + LE++ + +D mKIAA0291 767 RMKETVEGLQDKLNKRdkeVTALTSQMDMLRAQVSALENKCKSGEKKIDS 816 avnElkaAeERakKAqaDaarLaeELrqEQehsqklErlRKqLEsqvKeL +++E++ e + +L + +E lRK E+ + eL mKIAA0291 817 LLKEKRRLEAELEAVSRKTHDASGQL-----VHISQELLRK--ERSLNEL 859 qvRLdEaEaaAlkgGKkvIqKLEaRVReLEaELdgEqRRhaetqKnlRKa v L Ea + E +L+ E Ka mKIAA0291 860 RVLLLEANRHSPGP---------------ERDLSRE----------VHKA 884 eRrvKELqfQvEEDkKnlerlQDLvDKLqaKiKtyKRQlEEaEEiaqinl e r+KE +K + ++ L +KL+ K + l+E+ + i mKIAA0291 885 EWRIKE--------QKLKDDIRGLREKLTGLDKE--KSLSEQRRYSLIDP 924 s...KyRkaQre.......LEdAEERADqAEsslnklRqreaKsRr<-* ++++ + k+Q++ ++++ L dA A q E+ + lR + s r mKIAA0291 925 AsppELLKLQHQlvstedaLRDALNQAQQVERLVEALR---GCSDR 967 //